HL_9E0N_080

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0N_080 not in the Motif Atlas

Geometric match to HL_8CRE_222

Geometric discrepancy: 0.1695

The information below is about HL_8CRE_222

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9E0N|1|a|C|379
9E0N|1|a|G|380
9E0N|1|a|C|381
9E0N|1|a|A|382
9E0N|1|a|A|383
9E0N|1|a|G|384

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16