HL_9E0P_004

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

AGUGAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_004 not in the Motif Atlas

Geometric match to HL_4WF9_004

Geometric discrepancy: 0.2296

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9E0P|1|A|A|134
9E0P|1|A|G|135
9E0P|1|A|U|136
9E0P|1|A|G|137
9E0P|1|A|A|138
9E0P|1|A|U|139
9E0P|1|A|G|140
9E0P|1|A|U|141

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23

Chain Z

Large ribosomal subunit protein uL29