Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9E0P_0011/A/56:65No text annotation
HL_9E0P_0021/A/84:93No text annotation
HL_9E0P_0031/A/120:125No text annotation
geometric
HL_5J7L_136
HL_82710.2
HL_9E0P_0041/A/134:141GNRA wlth tandem sheared
geometric
HL_4WF9_004
HL_81538.2
HL_9E0P_0051/A/157:167No text annotation
geometric
HL_5J7L_138
HL_68257.1
HL_9E0P_0061/A/193:200No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_9E0P_0071/A/224:230No text annotation
geometric
HL_5J7L_140
HL_62934.1
HL_9E0P_0081/A/246:252No text annotation
geometric
HL_4WF9_008
HL_37369.2
HL_9E0P_0091/A/283:303No text annotation
HL_9E0P_0101/A/387:394T-loop with 2 stacked bulged bases
geometric
HL_4V9F_010
HL_01609.3
HL_9E0P_0111/A/401:405No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_9E0P_0121/A/409:417T-loop with unstacked turn
geometric
HL_5J7L_144
HL_27670.2
HL_9E0P_0131/A/469:481No text annotation
HL_9E0P_0141/A/498:505Pseudoknot geometry
geometric
HL_7A0S_014
HL_30680.3
HL_9E0P_0151/A/550:555GNRA
geometric
HL_5J7L_027
HL_37824.8
HL_9E0P_0161/A/575:580GNRA
geometric
HL_9DFE_015
HL_37824.8
HL_9E0P_0171/A/658:667T-loop with 2 stacked bulged bases
geometric
HL_9DFE_016
HL_28252.9
HL_9E0P_0181/A/705:710No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_9E0P_0191/A/723:728GNRA
geometric
HL_4LFB_028
HL_37824.8
HL_9E0P_0201/A/735:741GNRA
geometric
HL_1XJR_001
HL_37824.8
HL_9E0P_0211/A/755:760tRNA D-loop
geometric
HL_4V9K_033
HL_48417.6
HL_9E0P_0221/A/827:834GNRA wlth tandem sheared
geometric
HL_9DFE_020
HL_81538.2
HL_9E0P_0231/A/859:868No text annotation
geometric
HL_7A0S_022
HL_88205.2
HL_9E0P_0241/A/894:900No text annotation
geometric
HL_4V9F_025
HL_87954.2
HL_9E0P_0251/A/941:946No text annotation
geometric
HL_8CRE_021
HL_70782.2
HL_9E0P_0261/A/1072:1079GNRA
geometric
HL_7A0S_026
HL_37824.8
HL_9E0P_0271/A/1096:1103No text annotation
geometric
HL_4WF9_028
HL_42998.2
HL_9E0P_0281/A/1182:1192No text annotation
HL_9E0P_0291/A/1210:1217GNRA wlth tandem sheared
geometric
HL_5D8H_002
HL_81538.2
HL_9E0P_0301/A/1290:1293tRNA anticodon loop with synthetase
geometric
HL_1H4S_002
HL_48417.6
HL_9E0P_0311/A/1336:1341GNRA
geometric
HL_7A0S_031
HL_37824.8
HL_9E0P_0321/A/1396:1404T-loop with 2 stacked bulged bases
geometric
HL_8CRE_030
HL_28252.9
HL_9E0P_0331/A/1439:1445Pseudoknot geometry with 3' bulge
geometric
HL_4V9F_035
HL_57176.2
HL_9E0P_0341/A/1478:1483GNRA
geometric
HL_5J7L_167
HL_37824.8
HL_9E0P_0351/A/1504:1513No text annotation
geometric
HL_4V9F_037
HL_81545.2
HL_9E0P_0361/A/1571:1600No text annotation
HL_9E0P_0371/A/1671:1682No text annotation
HL_9E0P_0381/A/1712:1718Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_170
HL_57176.2
HL_9E0P_0391/A/1785:1788Mini UNCG
geometric
HL_5F9R_002
HL_48778.2
HL_9E0P_0401/A/1830:1837No text annotation
geometric
HL_5J7L_173
HL_89567.2
HL_9E0P_0411/A/1848:1854GNRA
geometric
HL_7WKP_001
HL_37824.8
HL_9E0P_0421/A/1909:1914UNCG
geometric
HL_4PMI_004
HL_34617.5
HL_9E0P_0431/A/1969:1973No text annotation
geometric
HL_5J7L_177
HL_80709.3
HL_9E0P_0441/A/1994:2004No text annotation
geometric
HL_4WF9_043
HL_01962.2
HL_9E0P_0451/A/2023:2028GNRA
geometric
HL_9DFE_062
HL_37824.8
HL_9E0P_0461/A/2089:2093No text annotation
geometric
HL_8CRE_012
HL_27483.1
HL_9E0P_0471/A/2134:2144No text annotation
geometric
HL_8CRE_047
HL_25847.2
HL_9E0P_0481/A/2173:2181No text annotation
geometric
HL_4WF9_046
HL_20167.2
HL_9E0P_0491/A/2251:2260No text annotation
geometric
HL_4WF9_047
HL_61996.3
HL_9E0P_0501/A/2366:2371No text annotation
HL_9E0P_0511/A/2432:2439No text annotation
HL_9E0P_0521/A/2472:2480No text annotation
geometric
HL_8CRE_053
HL_85367.2
HL_9E0P_0531/A/2488:2500No text annotation
geometric
HL_4WF9_050
HL_91939.2
HL_9E0P_0541/A/2528:2536No text annotation
geometric
HL_4V9F_057
HL_50860.2
HL_9E0P_0551/A/2548:2555Pseudoknot geometry
geometric
HL_8CRE_056
HL_93324.4
HL_9E0P_0561/A/2579:2586GNRA with extra cWW
geometric
HL_4WF9_053
HL_04259.3
HL_9E0P_0571/A/2598:2603GNRA
geometric
HL_5FJC_002
HL_37824.8
HL_9E0P_0581/A/2628:2637No text annotation
geometric
HL_5J7L_192
HL_53454.2
HL_9E0P_0591/A/2695:2703No text annotation
geometric
HL_4V9F_062
HL_32735.2
HL_9E0P_0601/A/2752:2759GNRA variation
geometric
HL_5J7L_194
HL_31585.4
HL_9E0P_0611/A/2775:2781No text annotation
geometric
HL_7A0S_061
HL_30068.2
HL_9E0P_0621/A/2818:2823GNRA
geometric
HL_7A0S_062
HL_37824.8
HL_9E0P_0631/A/2882:2887GNRA
geometric
HL_5J7L_197
HL_37824.8
HL_9E0P_0641/A/2925:2930Ribsomal LSU H95
geometric
HL_5J7L_198
HL_65794.5
HL_9E0P_0651/A/2969:2983No text annotation
geometric
HL_8CRE_066
HL_74055.2
HL_9E0P_0661/A/3019:3023No text annotation
HL_9E0P_0671/A/3040:3048No text annotation
geometric
HL_9DFE_065
HL_64690.6
HL_9E0P_0681/A/3077:3082GNRA
geometric
HL_7A0S_062
HL_37824.8
HL_9E0P_0691/B/34:48No text annotation
geometric
HL_5NS3_003
HL_97756.2
HL_9E0P_0701/B/83:90No text annotation
geometric
HL_8CRE_014
HL_41464.2
HL_9E0P_0711/a/16:26No text annotation
geometric
HL_5J7L_001
HL_89881.5
HL_9E0P_0721/a/83:86No text annotation
geometric
HL_8P9A_116
HL_32346.4
HL_9E0P_0731/a/155:160No text annotation
geometric
HL_5J7L_177
HL_80709.3
HL_9E0P_0741/a/191:196No text annotation
HL_9E0P_0751/a/213:218No text annotation
HL_9E0P_0761/a/259:267GNRA related
geometric
HL_5J7L_006
HL_84299.4
HL_9E0P_0771/a/296:301GNRA
geometric
HL_5J7L_007
HL_37824.8
HL_9E0P_0781/a/320:333No text annotation
HL_9E0P_0791/a/342:347UNCG variation
geometric
HL_7LYF_002
HL_34617.5
HL_9E0P_0801/a/379:384GNRA
geometric
HL_5F9F_003
HL_37824.8
HL_9E0P_0811/a/419:424UNCG
geometric
HL_5J7L_171
HL_34617.5
HL_9E0P_0821/a/454:459No text annotation
HL_9E0P_0831/a/502:507GNRA variation
geometric
HL_4LFB_033
HL_37824.8
HL_9E0P_0841/a/597:603GNRA-like with tWH
geometric
HL_4LFB_014
HL_10453.3
HL_9E0P_0851/a/669:678No text annotation
geometric
HL_8CRE_210
HL_75293.5
HL_9E0P_0861/a/706:711GNRA
geometric
HL_8CRE_211
HL_37824.8
HL_9E0P_0871/a/766:776No text annotation
geometric
HL_8CRE_212
HL_75293.5
HL_9E0P_0881/a/844:849GNRA
geometric
HL_4LCK_004
HL_37824.8
HL_9E0P_0891/a/879:884GNRA
geometric
HL_5J7L_190
HL_37824.8
HL_9E0P_0901/a/945:954No text annotation
geometric
HL_8CRE_216
HL_50779.4
HL_9E0P_0911/a/995:1000GNRA
geometric
HL_8P9A_159
HL_37824.8
HL_9E0P_0921/a/1009:1015No text annotation
HL_9E0P_0931/a/1056:1061GNRA
geometric
HL_4LFB_024
HL_37824.8
HL_9E0P_0941/a/1069:1076T-loop related
geometric
HL_8CRE_219
HL_77436.5
HL_9E0P_0951/a/1114:1121No text annotation
HL_9E0P_0961/a/1146:1152GNRA
geometric
HL_4LFB_012
HL_37824.8
HL_9E0P_0971/a/1246:1251GNRA
geometric
HL_2Z75_004
HL_37824.8
HL_9E0P_0981/a/1296:1305No text annotation
HL_9E0P_0991/a/1338:1349No text annotation
HL_9E0P_1001/a/1432:1438No text annotation
HL_9E0P_1011/a/1499:1504GNRA
geometric
HL_5J7L_031
HL_37824.8

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9E0P_0011/A/21:27,
1/A/597:603
Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
IL_04021.2
IL_9E0P_0021/A/33:34,
1/A/530:532
Single bulged A
geometric
IL_9DFE_002
IL_31462.7
IL_9E0P_0031/A/40:41,
1/A/522:524
Minor groove platform
geometric
IL_5J7L_247
IL_51454.3
IL_9E0P_0041/A/78:82,
1/A/95:102
Kink-turn
geometric
IL_6UFG_001
IL_01488.3
IL_9E0P_0051/A/182:183,
1/A/211:213
Single stack bend
geometric
IL_8P9A_328
IL_90729.1
IL_9E0P_0061/A/187:193,
1/A/200:207
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_006
IL_04346.10
IL_9E0P_0071/A/239:245,
1/A/253:258
7x6 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_251
IL_26307.2
IL_9E0P_0081/A/356:364,
1/A/438:439
No text annotation
IL_9E0P_0091/A/369:371,
1/A/432:433
No text annotation
IL_9E0P_0101/A/374:376,
1/A/425:429
No text annotation
geometric
IL_9DFE_011
IL_69440.3
IL_9E0P_0111/A/382:384,
1/A/397:398
Single bulged U
geometric
IL_3TZR_002
IL_89505.4
IL_9E0P_0121/A/569:572,
1/A/583:596
No text annotation
geometric
IL_8P9A_243
IL_81516.2
IL_9E0P_0131/A/623:626,
1/A/646:649
Double sheared
geometric
IL_5J7L_256
IL_09705.15
IL_9E0P_0141/A/630:631,
1/A/640:642
No text annotation
IL_9E0P_0151/A/656:658,
1/A/667:669
Isolated non-canonical cWW pair
geometric
IL_5VCI_002
IL_87907.2
IL_9E0P_0161/A/683:685,
1/A/780:781
No text annotation
geometric
IL_8ZA0_002
IL_00225.14
IL_9E0P_0171/A/699:703,
1/A/712:716
No text annotation
geometric
IL_9DFE_014
IL_66798.2
IL_9E0P_0181/A/787:789,
1/A/921:923
Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_87907.2
IL_9E0P_0191/A/789:793,
1/A/914:921
tHW-tHW cross-strand stack
geometric
IL_5J7L_260
IL_54041.2
IL_9E0P_0201/A/812:813,
1/A/878:880
Single bulged A
geometric
IL_4V9F_025
IL_31462.7
IL_9E0P_0211/A/817:818,
1/A/843:845
Single bulged G
geometric
IL_4WF9_023
IL_00225.14
IL_9E0P_0221/A/818:822,
1/A/839:843
Triple sheared
geometric
IL_5J7L_310
IL_50730.2
IL_9E0P_0231/A/853:855,
1/A/872:873
Major groove platform
geometric
IL_5J7L_264
IL_48076.6
IL_9E0P_0241/A/890:892,
1/A/902:906
No text annotation
IL_9E0P_0251/A/952:953,
1/A/1057:1059
Single stack bend
geometric
IL_7MLX_001
IL_90729.1
IL_9E0P_0261/A/959:961,
1/A/1048:1051
No text annotation
IL_9E0P_0271/A/959:964,
1/A/1043:1051
No text annotation
IL_9E0P_0281/A/961:964,
1/A/1043:1048
No text annotation
IL_9E0P_0291/A/971:977,
1/A/1030:1036
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
IL_29198.2
IL_9E0P_0301/A/977:978,
1/A/1028:1030
Minor groove platform
geometric
IL_4V9F_034
IL_51454.3
IL_9E0P_0311/A/979:984,
1/A/1024:1027
C-loop
geometric
IL_7A0S_029
IL_26222.2
IL_9E0P_0321/A/986:988,
1/A/1020:1022
No text annotation
geometric
IL_8CRE_412
IL_42997.3
IL_9E0P_0331/A/991:996,
1/A/1012:1017
No text annotation
geometric
IL_8P9A_410
IL_85536.2
IL_9E0P_0341/A/996:997,
1/A/1010:1012
No text annotation
IL_9E0P_0351/A/1066:1067,
1/A/1084:1086
Single bulged G
geometric
IL_8VFS_001
IL_00225.14
IL_9E0P_0361/A/1112:1114,
1/A/1278:1279
Single bulged C
geometric
IL_4WF9_035
IL_61258.15
IL_9E0P_0371/A/1116:1120,
1/A/1272:1276
UAA/GAN
geometric
IL_4WF9_036
IL_38507.2
IL_9E0P_0381/A/1122:1129,
1/A/1269:1270
SSU/LSU pseudoknot
geometric
IL_4WF9_037
IL_41203.4
IL_9E0P_0391/A/1129:1131,
1/A/1268:1269
No text annotation
IL_9E0P_0401/A/1136:1142,
1/A/1258:1263
Kink-turn related
geometric
IL_5J7L_280
IL_57188.5
IL_9E0P_0411/A/1142:1148,
1/A/1242:1258
No text annotation
geometric
IL_4WF9_040
IL_50715.3
IL_9E0P_0421/A/1149:1152,
1/A/1239:1241
Isolated non-canonical cWW pair
geometric
IL_7A0S_038
IL_57744.1
IL_9E0P_0431/A/1161:1170,
1/A/1225:1230
No text annotation
IL_9E0P_0441/A/1177:1180,
1/A/1194:1197
No text annotation
geometric
IL_4V9F_110
IL_92446.2
IL_9E0P_0451/A/1205:1209,
1/A/1218:1220
Major groove platform with extra cWW
geometric
IL_1MMS_002
IL_51387.3
IL_9E0P_0461/A/1311:1313,
1/A/1362:1365
Isolated non-canonical cWW pair
geometric
IL_7QQP_008
IL_87907.2
IL_9E0P_0471/A/1322:1329,
1/A/1349:1353
Kink-turn
geometric
IL_7EAG_003
IL_70923.9
IL_9E0P_0481/A/1333:1334,
1/A/1343:1345
Single bulged A
geometric
IL_2VPL_002
IL_31462.7
IL_9E0P_0491/A/1377:1384,
1/A/2235:2241
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_045
IL_04346.10
IL_9E0P_0501/A/1425:1428,
1/A/1821:1822
Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_50694.7
IL_9E0P_0511/A/1434:1438,
1/A/1446:1448
C-loop
geometric
IL_4V9F_051
IL_63596.11
IL_9E0P_0521/A/1466:1470,
1/A/1491:1495
UAA/GAN
geometric
IL_7A0S_048
IL_89021.2
IL_9E0P_0531/A/1472:1476,
1/A/1485:1489
tSH-tHW-tHS
geometric
IL_5J7L_293
IL_17136.7
IL_9E0P_0541/A/1529:1531,
1/A/1804:1806
Isolated non-canonical cWW pair
geometric
IL_7ECN_001
IL_87907.2
IL_9E0P_0551/A/1540:1543,
1/A/1627:1632
No text annotation
IL_9E0P_0561/A/1550:1557,
1/A/1614:1620
No text annotation
IL_9E0P_0571/A/1560:1563,
1/A/1608:1611
No text annotation
geometric
IL_8BH9_001
IL_51479.1
IL_9E0P_0581/A/1563:1571,
1/A/1600:1608
No text annotation
IL_9E0P_0591/A/1638:1642,
1/A/1797:1800
No text annotation
geometric
IL_9DFE_009
IL_99646.2
IL_9E0P_0601/A/1653:1656,
1/A/1777:1781
tWW and non-canonical cWW
geometric
IL_4PMI_008
IL_58112.2
IL_9E0P_0611/A/1658:1661,
1/A/1771:1775
No text annotation
geometric
IL_9DFE_056
IL_99646.2
IL_9E0P_0621/A/1689:1692,
1/A/1742:1746
No text annotation
geometric
IL_5J7L_299
IL_68574.4
IL_9E0P_0631/A/1694:1699,
1/A/1735:1740
No text annotation
IL_9E0P_0641/A/1702:1703,
1/A/1726:1732
No text annotation
IL_9E0P_0651/A/1709:1711,
1/A/1719:1720
No text annotation
IL_9E0P_0661/A/1869:1874,
1/A/2228:2230
No text annotation
IL_9E0P_0671/A/1881:1883,
1/A/2219:2221
No text annotation
geometric
IL_8P9A_303
IL_67095.2
IL_9E0P_0681/A/1884:1887,
1/A/2217:2218
Major groove platform; stack outside cWW
geometric
IL_9DFE_065
IL_50694.7
IL_9E0P_0691/A/1884:1892,
1/A/2214:2218
No text annotation
geometric
IL_8P9A_305
IL_22854.4
IL_9E0P_0701/A/1887:1892,
1/A/2214:2217
No text annotation
geometric
IL_8P9A_306
IL_76758.2
IL_9E0P_0711/A/1904:1909,
1/A/1914:1920
tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
IL_47346.2
IL_9E0P_0721/A/1930:1934,
1/A/1960:1963
tWW and near cWH
geometric
IL_6DLR_005
IL_04785.1
IL_9E0P_0731/A/1937:1942,
1/A/1952:1957
No text annotation
geometric
IL_8ZA4_001
IL_76308.6
IL_9E0P_0741/A/1987:1988,
1/A/2204:2206
Single bulged A
geometric
IL_4V9F_064
IL_31462.7
IL_9E0P_0751/A/2015:2021,
1/A/2030:2038
Kink-turn related
geometric
IL_7A0S_065
IL_17069.5
IL_9E0P_0761/A/2054:2057,
1/A/2126:2127
Minor groove platform, major groove intercalation
geometric
IL_5J7L_314
IL_95583.2
IL_9E0P_0771/A/2058:2059,
1/A/2122:2125
Major groove intercalation
geometric
IL_4V9F_067
IL_82107.5
IL_9E0P_0781/A/2063:2066,
1/A/2117:2118
Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_316
IL_68140.4
IL_9E0P_0791/A/2068:2072,
1/A/2111:2115
UAA/GAN with extra stack
geometric
IL_9DFE_074
IL_89021.2
IL_9E0P_0801/A/2073:2078,
1/A/2105:2110
No text annotation
geometric
IL_8P9A_451
IL_85536.2
IL_9E0P_0811/A/2081:2084,
1/A/2098:2102
UAA/GAN related
geometric
IL_5J7L_317
IL_77691.5
IL_9E0P_0821/A/2157:2158,
1/A/2188:2191
Bulged stacked bases
geometric
IL_7A0S_071
IL_22551.4
IL_9E0P_0831/A/2158:2169,
1/A/2185:2188
No text annotation
IL_9E0P_0841/A/2274:2276,
1/A/2841:2842
Major groove platform
geometric
IL_9DFE_078
IL_48076.6
IL_9E0P_0851/A/2278:2280,
1/A/2836:2839
No text annotation
geometric
IL_4V9F_073
IL_83389.2
IL_9E0P_0861/A/2293:2294,
1/A/2662:2665
Minor groove platform
geometric
IL_8P9A_322
IL_51454.3
IL_9E0P_0871/A/2304:2306,
1/A/2460:2463
Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_9E0P_0881/A/2308:2310,
1/A/2456:2458
Isolated non-canonical cWW pair
geometric
IL_7A0S_078
IL_28037.2
IL_9E0P_0891/A/2317:2319,
1/A/2416:2418
Isolated non-canonical cWW pair
geometric
IL_4V9F_023
IL_87907.2
IL_9E0P_0901/A/2330:2340,
1/A/2389:2405
No text annotation
IL_9E0P_0911/A/2330:2351,
1/A/2383:2405
No text annotation
IL_9E0P_0921/A/2340:2351,
1/A/2383:2389
No text annotation
IL_9E0P_0931/A/2352:2359,
1/A/2378:2382
Kink-turn
geometric
IL_5J7L_330
IL_70923.9
IL_9E0P_0941/A/2425:2427,
1/A/2444:2445
Single bulged C
geometric
IL_6XKO_001
IL_61258.15
IL_9E0P_0951/A/2521:2523,
1/A/2541:2545
Isolated tHS basepair with bulges
geometric
IL_4WF9_086
IL_61476.2
IL_9E0P_0961/A/2574:2577,
1/A/2588:2591
Double sheared
geometric
IL_8CRE_402
IL_09705.15
IL_9E0P_0971/A/2625:2627,
1/A/2638:2639
No text annotation
geometric
IL_8CRE_140
IL_89505.4
IL_9E0P_0981/A/2677:2678,
1/A/2722:2724
Single stack bend
geometric
IL_9DFE_091
IL_26793.1
IL_9E0P_0991/A/2678:2679,
1/A/2720:2722
Major groove platform
geometric
IL_3OXE_003
IL_48076.6
IL_9E0P_1001/A/2681:2683,
1/A/2717:2718
Major groove platform
geometric
IL_4LFB_024
IL_48076.6
IL_9E0P_1011/A/2683:2687,
1/A/2711:2717
No text annotation
IL_9E0P_1021/A/2690:2694,
1/A/2704:2708
Double sheared with non-canonical cWW
geometric
IL_4WF9_093
IL_17948.2
IL_9E0P_1031/A/2731:2732,
1/A/2804:2806
Major groove platform
geometric
IL_7A0S_088
IL_07039.3
IL_9E0P_1041/A/2734:2736,
1/A/2798:2802
Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_07785.1
IL_9E0P_1051/A/2736:2737,
1/A/2795:2798
Multiple bulged bases
geometric
IL_7A0S_090
IL_42626.2
IL_9E0P_1061/A/2746:2747,
1/A/2764:2767
Major groove platform with intercalation
geometric
IL_5J7L_342
IL_02555.1
IL_9E0P_1071/A/2815:2816,
1/A/2825:2827
Single bulged A
geometric
IL_8P9A_399
IL_31462.7
IL_9E0P_1081/A/2860:2864,
1/A/2998:3006
No text annotation
geometric
IL_9DFE_101
IL_04638.3
IL_9E0P_1091/A/2876:2882,
1/A/2887:2892
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
IL_16458.4
IL_9E0P_1101/A/2904:2908,
1/A/2949:2951
C-loop
geometric
IL_8CRE_445
IL_63596.11
IL_9E0P_1111/A/2911:2915,
1/A/2942:2946
UAA/GAN related, with intercalation
geometric
IL_4WF9_102
IL_23774.1
IL_9E0P_1121/A/2919:2920,
1/A/2935:2938
Multiple bulged bases
geometric
IL_7A0S_097
IL_42626.2
IL_9E0P_1131/A/2961:2966,
1/A/2986:2991
UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_9E0P_1141/A/3059:3061,
1/A/3098:3101
No text annotation
IL_9E0P_1151/A/3064:3066,
1/A/3092:3095
Decoding loop related
geometric
IL_7A0S_100
IL_31531.3
IL_9E0P_1161/A/3068:3073,
1/A/3086:3090
No text annotation
geometric
IL_8CRE_139
IL_70411.2
IL_9E0P_1171/B/3:6,
1/B/111:114
No text annotation
IL_9E0P_1181/B/6:9,
1/B/108:111
No text annotation
geometric
IL_1CSL_001
IL_25872.4
IL_9E0P_1191/B/29:34,
1/B/48:55
No text annotation
IL_9E0P_1201/a/34:36,
1/a/532:533
Single bulged G
geometric
IL_4LFB_001
IL_00225.14
IL_9E0P_1211/a/48:49,
1/a/396:398
Single bulged A
geometric
IL_4LFB_002
IL_31462.7
IL_9E0P_1221/a/51:56,
1/a/359:361
No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_9E0P_1231/a/58:60,
1/a/356:357
Minor groove platform
geometric
IL_8P9A_401
IL_51454.3
IL_9E0P_1241/a/67:70,
1/a/99:100
Multiple bulged bases
geometric
IL_5W1H_001
IL_82107.5
IL_9E0P_1251/a/71:73,
1/a/95:98
Minor groove platform with extra cWW
geometric
IL_5J7L_006
IL_90351.1
IL_9E0P_1261/a/74:77,
1/a/93:94
Minor groove platform
geometric
IL_5J7L_007
IL_15052.4
IL_9E0P_1271/a/77:78,
1/a/91:93
Major groove platform
geometric
IL_7A0S_082
IL_48076.6
IL_9E0P_1281/a/125:128,
1/a/231:232
Multiple bulged bases
geometric
IL_4LFB_007
IL_33761.2
IL_9E0P_1291/a/129:133,
1/a/227:230
No text annotation
geometric
IL_4LFB_008
IL_64231.5
IL_9E0P_1301/a/144:150,
1/a/165:172
tWH-tWH-tHW-tHW
geometric
IL_5J7L_012
IL_80604.6
IL_9E0P_1311/a/187:188,
1/a/199:201
No text annotation
geometric
IL_8CRE_472
IL_89505.4
IL_9E0P_1321/a/242:247,
1/a/277:284
Kink-turn with non-sequential stacking
geometric
IL_8CRE_408
IL_46174.3
IL_9E0P_1331/a/249:252,
1/a/274:275
No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_9E0P_1341/a/292:293,
1/a/304:308
C-loop
geometric
IL_4LFB_013
IL_03109.3
IL_9E0P_1351/a/367:369,
1/a/392:393
Single bulged U
geometric
IL_8P9A_396
IL_89505.4
IL_9E0P_1361/a/371:375,
1/a/389:390
C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_9E0P_1371/a/375:376,
1/a/387:389
Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_9E0P_1381/a/409:416,
1/a/427:433
No text annotation
geometric
IL_4LFB_017
IL_28026.3
IL_9E0P_1391/a/440:442,
1/a/472:477
No text annotation
geometric
IL_5J7L_021
IL_33323.1
IL_9E0P_1401/a/446:450,
1/a/463:468
6x5 Sarcin-Ricin; G-bulge
geometric
IL_4LFB_018
IL_88269.4
IL_9E0P_1411/a/450:453,
1/a/460:463
No text annotation
IL_9E0P_1421/a/484:491,
1/a/520:521
SSU/LSU pseudoknot
geometric
IL_4LFB_020
IL_41203.4
IL_9E0P_1431/a/495:501,
1/a/508:516
No text annotation
geometric
IL_8P9A_404
IL_54177.4
IL_9E0P_1441/a/549:555,
1/a/862:863
No text annotation
geometric
IL_5J7L_026
IL_38186.6
IL_9E0P_1451/a/560:564,
1/a/737:741
tSH-tHW-tHS
geometric
IL_8CRE_438
IL_17136.7
IL_9E0P_1461/a/574:576,
1/a/624:625
Major groove platform
geometric
IL_4V9F_044
IL_48076.6
IL_9E0P_1471/a/577:578,
1/a/620:623
Major groove minor groove platform; mini C-loop
geometric
IL_4LFB_025
IL_68140.4
IL_9E0P_1481/a/585:591,
1/a/609:613
No text annotation
IL_9E0P_1491/a/634:635,
1/a/731:734
Major groove platform; stack outside cWW
geometric
IL_8P9A_417
IL_50694.7
IL_9E0P_1501/a/637:638,
1/a/727:729
Major groove platform
geometric
IL_4WF9_090
IL_48076.6
IL_9E0P_1511/a/642:646,
1/a/720:723
Tandem non-canonical cWW pairs
geometric
IL_1G1X_003
IL_85033.2
IL_9E0P_1521/a/653:657,
1/a/693:697
Triple non-canonical cWW pairs
geometric
IL_4LFB_065
IL_49751.4
IL_9E0P_1531/a/664:668,
1/a/679:686
Kink-turn
geometric
IL_5J7L_035
IL_01488.3
IL_9E0P_1541/a/754:758,
1/a/784:785
Left turn
geometric
IL_5J7L_036
IL_29346.2
IL_9E0P_1551/a/759:763,
1/a/779:783
tSH-tHW-tHS
geometric
IL_8CRE_438
IL_17136.7
IL_9E0P_1561/a/869:876,
1/a/887:892
8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_5J7L_038
IL_41756.4
IL_9E0P_1571/a/904:905,
1/a/1376:1378
Single bulged A
geometric
IL_8CRE_443
IL_31462.7
IL_9E0P_1581/a/907:909,
1/a/1373:1374
Single bulged G
geometric
IL_5J7L_040
IL_00225.14
IL_9E0P_1591/a/915:917,
1/a/1363:1367
Minor groove platform
geometric
IL_5J7L_041
IL_47078.3
IL_9E0P_1601/a/935:936,
1/a/1207:1209
No text annotation
IL_9E0P_1611/a/975:979,
1/a/1024:1025
Minor groove platform
geometric
IL_4LFB_039
IL_47078.3
IL_9E0P_1621/a/1028:1030,
1/a/1189:1190
Single bulged U
geometric
IL_3MEI_001
IL_89505.4
IL_9E0P_1631/a/1032:1036,
1/a/1185:1187
No text annotation
geometric
IL_8P9A_438
IL_76319.5
IL_9E0P_1641/a/1037:1038,
1/a/1180:1184
Minor groove platform
geometric
IL_5J7L_048
IL_95583.2
IL_9E0P_1651/a/1040:1041,
1/a/1176:1178
Single bulged A
geometric
IL_5J7L_049
IL_31462.7
IL_9E0P_1661/a/1041:1043,
1/a/1174:1176
Isolated non-canonical cWW pair
geometric
IL_3RW6_004
IL_87907.2
IL_9E0P_1671/a/1104:1108,
1/a/1125:1130
No text annotation
IL_9E0P_1681/a/1109:1112,
1/a/1123:1124
Minor groove platform
geometric
IL_3IWN_005
IL_15052.4
IL_9E0P_1691/a/1139:1142,
1/a/1156:1162
No text annotation
geometric
IL_5J7L_053
IL_42032.1
IL_9E0P_1701/a/1228:1235,
1/a/1264:1272
No text annotation
IL_9E0P_1711/a/1236:1239,
1/a/1258:1263
No text annotation
IL_9E0P_1721/a/1240:1245,
1/a/1252:1257
No text annotation
IL_9E0P_1731/a/1285:1290,
1/a/1311:1316
No text annotation
geometric
IL_8CRE_465
IL_85536.2
IL_9E0P_1741/a/1382:1384,
1/a/1485:1488
No text annotation
geometric
IL_4LFB_056
IL_61438.4
IL_9E0P_1751/a/1384:1387,
1/a/1481:1485
No text annotation
geometric
IL_4LFB_068
IL_65718.4
IL_9E0P_1761/a/1388:1390,
1/a/1478:1480
Isolated non-canonical cWW pair
geometric
IL_4V9F_023
IL_87907.2
IL_9E0P_1771/a/1390:1392,
1/a/1475:1478
No text annotation
IL_9E0P_1781/a/1395:1397,
1/a/1470:1472
Isolated non-canonical cWW pair
geometric
IL_5J7L_061
IL_87907.2
IL_9E0P_1791/a/1399:1402,
1/a/1465:1468
Double sheared
geometric
IL_8CRE_471
IL_09705.15
IL_9E0P_1801/a/1407:1410,
1/a/1457:1460
Tandem non-canonical cWW pairs
geometric
IL_8P9A_327
IL_85033.2
IL_9E0P_1811/a/1413:1418,
1/a/1450:1454
No text annotation
IL_9E0P_1821/a/1418:1420,
1/a/1448:1450
Isolated non-canonical cWW pair
geometric
IL_8P9A_274
IL_87907.2
IL_9E0P_1831/a/1423:1426,
1/a/1443:1445
Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_9E0P_1841/a/1428:1431,
1/a/1439:1441
No text annotation
geometric
IL_5J7L_065
IL_31531.3

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9E0P_0011/A/27:28,
1/A/562:569,
1/A/596:597
No text annotation
geometric
J3_8P9A_046
J3_60031.2
J3_9E0P_0021/A/27:28,
1/A/562:572,
1/A/583:597
No text annotation
geometric
J3_8P9A_047
J3_92134.2
J3_9E0P_0031/A/29:32,
1/A/533:549,
1/A/556:561
No text annotation
geometric
J3_4V9F_013
J3_30040.2
J3_9E0P_0041/A/53:54,
1/A/67:73,
1/A/107:111
No text annotation
geometric
J3_5J7L_037
J3_35667.2
J3_9E0P_0051/A/317:319,
1/A/457:463,
1/A/487:492
No text annotation
J3_9E0P_0061/A/322:331,
1/A/350:352,
1/A/443:454
No text annotation
J3_9E0P_0071/A/378:382,
1/A/398:407,
1/A/419:423
No text annotation
geometric
J3_5J7L_068
J3_46299.2
J3_9E0P_0081/A/798:804,
1/A/888:890,
1/A/906:909
No text annotation
geometric
J3_8P9A_049
J3_64189.2
J3_9E0P_0091/A/813:815,
1/A/847:851,
1/A/875:878
No text annotation
geometric
J3_9DFE_008
J3_44724.7
J3_9E0P_0101/A/1171:1175,
1/A/1199:1205,
1/A/1220:1224
No text annotation
J3_9E0P_0111/A/1413:1418,
1/A/1843:1845,
1/A/1857:1860
No text annotation
geometric
J3_5J7L_041
J3_32852.6
J3_9E0P_0121/A/1421:1424,
1/A/1823:1829,
1/A/1838:1840
No text annotation
geometric
J3_7A0S_007
J3_71677.1
J3_9E0P_0131/A/1459:1465,
1/A/1496:1500,
1/A/1517:1518
No text annotation
geometric
J3_7A0S_018
J3_31965.2
J3_9E0P_0141/A/1531:1537,
1/A/1635:1637,
1/A/1801:1804
No text annotation
J3_9E0P_0151/A/1646:1650,
1/A/1784:1785,
1/A/1788:1793
No text annotation
geometric
J3_4V9F_017
J3_12393.2
J3_9E0P_0161/A/2314:2316,
1/A/2419:2423,
1/A/2447:2452
No text annotation
geometric
J3_9DFE_014
J3_89368.5
J3_9E0P_0171/A/2506:2508,
1/A/2608:2619,
1/A/2645:2651
No text annotation
geometric
J3_5J7L_070
J3_20992.1
J3_9E0P_0181/A/2519:2521,
1/A/2545:2547,
1/A/2556:2561
No text annotation
geometric
J3_4WF9_008
J3_61124.2
J3_9E0P_0191/A/2741:2744,
1/A/2769:2771,
1/A/2785:2791
No text annotation
geometric
J3_7A0S_011
J3_32601.5
J3_9E0P_0201/A/3035:3037,
1/A/3051:3057,
1/A/3103:3107
No text annotation
J3_9E0P_0211/B/9:29,
1/B/55:83,
1/B/90:108
No text annotation
J3_9E0P_0221/a/50:51,
1/a/361:367,
1/a/393:395
No text annotation
geometric
J3_4LFB_010
J3_67856.4
J3_9E0P_0231/a/566:568,
1/a/631:634,
1/a/734:735
No text annotation
geometric
J3_1KUQ_001
J3_56052.5
J3_9E0P_0241/a/566:568,
1/a/631:635,
1/a/731:735
No text annotation
geometric
J3_5J7L_051
J3_17385.4
J3_9E0P_0251/a/652:653,
1/a/697:705,
1/a/712:714
No text annotation
geometric
J3_4LFB_012
J3_11934.4
J3_9E0P_0261/a/806:809,
1/a/839:843,
1/a/850:856
No text annotation
J3_9E0P_0271/a/918:921,
1/a/1326:1332,
1/a/1355:1362
No text annotation
geometric
J3_4LFB_002
J3_25303.4
J3_9E0P_0281/a/925:928,
1/a/1216:1218,
1/a/1319:1322
No text annotation
geometric
J3_8CRE_079
J3_52655.4
J3_9E0P_0291/a/937:944,
1/a/955:966,
1/a/1202:1206
No text annotation
geometric
J3_8CRE_080
J3_83516.4
J3_9E0P_0301/a/972:975,
1/a/1025:1027,
1/a/1191:1196
No text annotation
J3_9E0P_0311/a/972:979,
1/a/1024:1027,
1/a/1191:1196
No text annotation
J3_9E0P_0321/a/986:989,
1/a/1006:1008,
1/a/1016:1017
No text annotation
J3_9E0P_0331/a/1043:1048,
1/a/1087:1093,
1/a/1168:1174
No text annotation
geometric
J3_4LFB_007
J3_08394.3
J3_9E0P_0341/a/1053:1054,
1/a/1063:1067,
1/a/1078:1082
No text annotation
geometric
J3_5J7L_009
J3_76043.3
J3_9E0P_0351/a/1096:1098,
1/a/1136:1139,
1/a/1162:1165
No text annotation
geometric
J3_5J7L_010
J3_82365.4
J3_9E0P_0361/a/1096:1098,
1/a/1136:1142,
1/a/1156:1165
No text annotation
geometric
J3_5J7L_054
J3_17791.2
J3_9E0P_0371/a/1218:1222,
1/a/1278:1285,
1/a/1316:1319
No text annotation
geometric
J3_4LFB_009
J3_37047.6
J4_9E0P_0011/A/269:274,
1/A/312:317,
1/A/492:494,
1/A/509:512
No text annotation
J4_9E0P_0021/A/378:382,
1/A/398:401,
1/A/405:407,
1/A/419:423
No text annotation
J4_9E0P_0031/A/1385:1391,
1/A/1409:1410,
1/A/1863:1866,
1/A/2233:2234
No text annotation
J4_9E0P_0041/A/1425:1429,
1/A/1453:1458,
1/A/1519:1520,
1/A/1815:1822
No text annotation
J4_9E0P_0051/A/1428:1429,
1/A/1453:1458,
1/A/1519:1520,
1/A/1815:1821
No text annotation
J4_9E0P_0061/A/1664:1667,
1/A/1686:1688,
1/A/1747:1751,
1/A/1762:1768
No text annotation
J4_9E0P_0071/A/1989:1993,
1/A/2005:2009,
1/A/2044:2047,
1/A/2199:2203
No text annotation
J4_9E0P_0081/A/2050:2052,
1/A/2129:2130,
1/A/2148:2157,
1/A/2191:2196
No text annotation
J4_9E0P_0091/A/2509:2513,
1/A/2567:2571,
1/A/2594:2596,
1/A/2605:2607
No text annotation
J4_9E0P_0101/A/2867:2870,
1/A/2898:2900,
1/A/2955:2959,
1/A/2993:2995
No text annotation
J4_9E0P_0111/a/111:119,
1/a/238:240,
1/a/286:289,
1/a/311:312
No text annotation
J4_9E0P_0121/a/140:141,
1/a/175:181,
1/a/207:212,
1/a/219:220
No text annotation
J4_9E0P_0131/a/555:557,
1/a/744:749,
1/a/790:801,
1/a/861:862
No text annotation
J5_9E0P_0011/A/44:51,
1/A/113:118,
1/A/127:128,
1/A/147:149,
1/A/175:177
No text annotation
J5_9E0P_0021/A/269:274,
1/A/312:319,
1/A/457:463,
1/A/487:494,
1/A/509:512
No text annotation
J5_9E0P_0031/A/618:620,
1/A/652:656,
1/A/669:671,
1/A/1376:1377,
1/A/2241:2242
No text annotation
J5_9E0P_0041/A/676:681,
1/A/783:786,
1/A/924:927,
1/A/1310:1311,
1/A/1365:1371
No text annotation
J5_9E0P_0051/A/694:697,
1/A/718:722,
1/A/729:732,
1/A/744:749,
1/A/766:771
No text annotation
J5_9E0P_0061/A/1892:1900,
1/A/1924:1925,
1/A/1968:1969,
1/A/1973:1981,
1/A/2212:2214
No text annotation
J5_9E0P_0071/A/2281:2288,
1/A/2670:2677,
1/A/2724:2731,
1/A/2806:2812,
1/A/2830:2835
No text annotation
J5_9E0P_0081/A/2297:2300,
1/A/2467:2470,
1/A/2482:2483,
1/A/2505:2506,
1/A/2651:2659
No text annotation
J5_9E0P_0091/a/40:43,
1/a/403:406,
1/a/436:440,
1/a/477:480,
1/a/525:528
No text annotation
J5_9E0P_0101/a/40:43,
1/a/403:406,
1/a/436:442,
1/a/472:480,
1/a/525:528
No text annotation
J5_9E0P_0111/a/62:65,
1/a/102:109,
1/a/314:316,
1/a/337:339,
1/a/350:354
No text annotation
J6_9E0P_0011/A/42:43,
1/A/178:182,
1/A/213:223,
1/A/231:235,
1/A/262:267,
1/A/514:521
No text annotation
J6_9E0P_0021/A/2297:2300,
1/A/2467:2470,
1/A/2482:2483,
1/A/2505:2508,
1/A/2608:2619,
1/A/2645:2659
No text annotation
J7_9E0P_0011/A/932:937,
1/A/950:951,
1/A/1060:1063,
1/A/1089:1094,
1/A/1105:1109,
1/A/1282:1283,
1/A/1300:1305
No text annotation
J8_9E0P_0011/A/5:12,
1/A/612:618,
1/A/2242:2247,
1/A/2264:2267,
1/A/2849:2854,
1/A/3012:3015,
1/A/3027:3032,
1/A/3110:3115
No text annotation

Problematic loops

No problematic loops


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