HL_9E0P_014

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

9E0P|1|A|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_014 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.1967

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9E0P|1|A|G|498
9E0P|1|A|G|499
9E0P|1|A|A|500
9E0P|1|A|C|501
9E0P|1|A|C|502
9E0P|1|A|A|503
9E0P|1|A|C|504
9E0P|1|A|C|505

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL15