HL_9E0P_016

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_016 not in the Motif Atlas

Geometric match to HL_9DFE_015

Geometric discrepancy: 0.1812

The information below is about HL_9DFE_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9E0P|1|A|C|575
9E0P|1|A|G|576
9E0P|1|A|G|577
9E0P|1|A|G|578
9E0P|1|A|A|579
9E0P|1|A|G|580

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL22