HL_9E0P_021

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

AAGAGU

Length

6 nucleotides

Bulged bases

9E0P|1|A|A|758, 9E0P|1|A|G|759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_021 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.3068

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9E0P|1|A|A|755
9E0P|1|A|A|756
9E0P|1|A|G|757
9E0P|1|A|A|758
9E0P|1|A|G|759
9E0P|1|A|U|760

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

Large ribosomal subunit protein bL27