HL_9E0P_033

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

9E0P|1|A|C|1440, 9E0P|1|A|U|1444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_033 not in the Motif Atlas

Geometric match to HL_4V9F_035

Geometric discrepancy: 0.2727

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9E0P|1|A|G|1439
9E0P|1|A|C|1440
9E0P|1|A|C|1441
9E0P|1|A|A|1442
9E0P|1|A|G|1443
9E0P|1|A|U|1444
9E0P|1|A|C|1445

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein bL17

Chain T

Large ribosomal subunit protein uL22