HL_9E0P_036

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGUGACCGCACCUUUCGGGGUGUGGCGUUG

Length

30 nucleotides

Bulged bases

9E0P|1|A|G|1572, 9E0P|1|A|U|1573, 9E0P|1|A|U|1585, 9E0P|1|A|C|1586, 9E0P|1|A|U|1593, 9E0P|1|A|U|1599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E0P|1|A|C|1571
9E0P|1|A|G|1572
9E0P|1|A|U|1573
9E0P|1|A|G|1574
9E0P|1|A|A|1575
9E0P|1|A|C|1576
9E0P|1|A|C|1577
9E0P|1|A|G|1578
9E0P|1|A|C|1579
9E0P|1|A|A|1580
9E0P|1|A|C|1581
9E0P|1|A|C|1582
9E0P|1|A|U|1583
9E0P|1|A|U|1584
9E0P|1|A|U|1585
9E0P|1|A|C|1586
9E0P|1|A|G|1587
9E0P|1|A|G|1588
9E0P|1|A|G|1589
9E0P|1|A|G|1590
9E0P|1|A|U|1591
9E0P|1|A|G|1592
9E0P|1|A|U|1593
9E0P|1|A|G|1594
9E0P|1|A|G|1595
9E0P|1|A|C|1596
9E0P|1|A|G|1597
9E0P|1|A|U|1598
9E0P|1|A|U|1599
9E0P|1|A|G|1600

Current chains

Chain A

23S rRNA

Nearby chains

Chain k

Small ribosomal subunit protein uS11