HL_9E0P_038

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GUAAAUC

Length

7 nucleotides

Bulged bases

9E0P|1|A|U|1713, 9E0P|1|A|U|1717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_038 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.2114

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9E0P|1|A|G|1712
9E0P|1|A|U|1713
9E0P|1|A|A|1714
9E0P|1|A|A|1715
9E0P|1|A|A|1716
9E0P|1|A|U|1717
9E0P|1|A|C|1718

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2