HL_9E0P_040

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

9E0P|1|A|A|1832, 9E0P|1|A|A|1834, 9E0P|1|A|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_040 not in the Motif Atlas

Geometric match to HL_5J7L_173

Geometric discrepancy: 0.158

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9E0P|1|A|C|1830
9E0P|1|A|A|1831
9E0P|1|A|A|1832
9E0P|1|A|C|1833
9E0P|1|A|A|1834
9E0P|1|A|C|1835
9E0P|1|A|A|1836
9E0P|1|A|G|1837

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL34

Chain T

Large ribosomal subunit protein uL22