HL_9E0P_052

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9E0P|1|A|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_052 not in the Motif Atlas

Geometric match to HL_8CRE_053

Geometric discrepancy: 0.1782

The information below is about HL_8CRE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9E0P|1|A|C|2472
9E0P|1|A|U|2473
9E0P|1|A|G|2474
9E0P|1|A|G|2475
9E0P|1|A|G|2476
9E0P|1|A|G|2477
9E0P|1|A|C|2478
9E0P|1|A|G|2479
9E0P|1|A|G|2480

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain X

Large ribosomal subunit protein bL27