HL_9E0P_053

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

9E0P|1|A|A|2492, 9E0P|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_053 not in the Motif Atlas

Geometric match to HL_4WF9_050

Geometric discrepancy: 0.157

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9E0P|1|A|C|2488
9E0P|1|A|U|2489
9E0P|1|A|A|2490
9E0P|1|A|A|2491
9E0P|1|A|A|2492
9E0P|1|A|A|2493
9E0P|1|A|U|2494
9E0P|1|A|G|2495
9E0P|1|A|U|2496
9E0P|1|A|A|2497
9E0P|1|A|A|2498
9E0P|1|A|C|2499
9E0P|1|A|G|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain X

Large ribosomal subunit protein bL27