HL_9E0P_065

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9E0P|1|A|G|2975, 9E0P|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_065 not in the Motif Atlas

Geometric match to HL_8CRE_066

Geometric discrepancy: 0.1918

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9E0P|1|A|C|2969
9E0P|1|A|U|2970
9E0P|1|A|G|2971
9E0P|1|A|A|2972
9E0P|1|A|A|2973
9E0P|1|A|A|2974
9E0P|1|A|G|2975
9E0P|1|A|C|2976
9E0P|1|A|A|2977
9E0P|1|A|U|2978
9E0P|1|A|C|2979
9E0P|1|A|U|2980
9E0P|1|A|A|2981
9E0P|1|A|A|2982
9E0P|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain G

Large ribosomal subunit protein uL6