HL_9E0P_067

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GCAGACCAC

Length

9 nucleotides

Bulged bases

9E0P|1|A|C|3041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_067 not in the Motif Atlas

Geometric match to HL_9DFE_065

Geometric discrepancy: 0.1293

The information below is about HL_9DFE_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9E0P|1|A|G|3040
9E0P|1|A|C|3041
9E0P|1|A|A|3042
9E0P|1|A|G|3043
9E0P|1|A|A|3044
9E0P|1|A|C|3045
9E0P|1|A|C|3046
9E0P|1|A|A|3047
9E0P|1|A|C|3048

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3

Chain O

Large ribosomal subunit protein bL17