HL_9E0P_073

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

9E0P|1|a|A|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_073 not in the Motif Atlas

Geometric match to HL_5J7L_177

Geometric discrepancy: 0.2843

The information below is about HL_5J7L_177

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

9E0P|1|a|G|155
9E0P|1|a|G|156
9E0P|1|a|A|157
9E0P|1|a|A|158
9E0P|1|a|A|159
9E0P|1|a|C|160

Current chains

Chain a

16S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL19

Chain t

Small ribosomal subunit protein bS20