HL_9E0P_083

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_083 not in the Motif Atlas

Geometric match to HL_4LFB_033

Geometric discrepancy: 0.2716

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9E0P|1|a|C|502
9E0P|1|a|A|503
9E0P|1|a|G|504
9E0P|1|a|C|505
9E0P|1|a|C|506
9E0P|1|a|G|507

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12