HL_9E0P_094

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9E0P|1|a|G|1074

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_094 not in the Motif Atlas

Geometric match to HL_8CRE_219

Geometric discrepancy: 0.3696

The information below is about HL_8CRE_219

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9E0P|1|a|G|1069
9E0P|1|a|U|1070
9E0P|1|a|U|1071
9E0P|1|a|A|1072
9E0P|1|a|A|1073
9E0P|1|a|G|1074
9E0P|1|a|U|1075
9E0P|1|a|C|1076

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

Small ribosomal subunit protein uS2

Chain g

Small ribosomal subunit protein uS7