HL_9E0P_096

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGUCAAC

Length

7 nucleotides

Bulged bases

9E0P|1|a|C|1149

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_096 not in the Motif Atlas

Geometric match to HL_4LFB_012

Geometric discrepancy: 0.2035

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9E0P|1|a|G|1146
9E0P|1|a|G|1147
9E0P|1|a|U|1148
9E0P|1|a|C|1149
9E0P|1|a|A|1150
9E0P|1|a|A|1151
9E0P|1|a|C|1152

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

Small ribosomal subunit protein uS2