HL_9E0P_097

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

9E0P|1|a|U|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E0P_097 not in the Motif Atlas

Geometric match to HL_2Z75_004

Geometric discrepancy: 0.3452

The information below is about HL_2Z75_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9E0P|1|a|C|1246
9E0P|1|a|G|1247
9E0P|1|a|U|1248
9E0P|1|a|G|1249
9E0P|1|a|A|1250
9E0P|1|a|G|1251

Current chains

Chain a

16S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL31

Chain m

Small ribosomal subunit protein uS13