HL_9E16_014

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGGGAUG

Length

8 nucleotides

Bulged bases

9E16|1|I|U|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E16_014 not in the Motif Atlas

Homologous match to HL_8B0X_041

Geometric discrepancy: 0.1614

The information below is about HL_8B0X_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9E16|1|I|C|388
9E16|1|I|U|389
9E16|1|I|G|390
9E16|1|I|G|391
9E16|1|I|G|392
9E16|1|I|A|393
9E16|1|I|U|394
9E16|1|I|G|395

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24