9E16 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9E16_001 | 1/B/33:47 | No text annotation | geometric HL_5NS3_003 HL_97756.4 | |
| HL_9E16_002 | 1/B/37:43 | No text annotation | homologous HL_4V9F_071 HL_59381.4 | |
| HL_9E16_003 | 1/B/83:88 | GNRA | geometric HL_4QLM_001 HL_34789.6 | |
| HL_9E16_006 | 1/I/123:128 | No text annotation | homologous HL_8B0X_035 HL_82710.4 | |
| HL_9E16_007 | 1/I/137:144 | GNRA with tandem sheared | geometric HL_4WF9_004 HL_98423.5 | |
| HL_9E16_008 | 1/I/160:170 | No text annotation | homologous HL_8B0X_037 NA | |
| HL_9E16_009 | 1/I/196:203 | No text annotation | homologous HL_8B0X_038 HL_02262.1 | |
| HL_9E16_010 | 1/I/227:232 | No text annotation | ||
| HL_9E16_014 | 1/I/388:395 | No text annotation | homologous HL_8B0X_041 HL_13999.5 | |
| HL_9E16_015 | 1/I/402:406 | No text annotation | geometric HL_9E6Q_011 HL_75660.10 | |
| HL_9E16_017 | 1/I/471:481 | No text annotation | homologous HL_8B0X_044 HL_91503.8 | |
| HL_9E16_018 | 1/I/499:506 | No text annotation | homologous HL_8B0X_045 HL_30680.5 | |
| HL_9E16_019 | 1/I/551:556 | No text annotation | homologous HL_8B0X_046 HL_34789.6 | |
| HL_9E16_020 | 1/I/576:581 | GNRA | homologous HL_7A0S_016 HL_34789.6 | |
| HL_9E16_022 | 1/I/668:677 | T-loop with 2 stacked bulged bases | homologous HL_8B0X_048 HL_33597.7 | |
| HL_9E16_024 | 1/I/733:738 | No text annotation | homologous HL_8B0X_050 HL_34789.6 | |
| HL_9E16_028 | 1/I/873:882 | No text annotation | homologous HL_7A0S_022 HL_50204.3 | |
| HL_9E16_030 | 1/I/955:960 | No text annotation | homologous HL_8B0X_055 HL_27530.3 | |
| HL_9E16_031 | 1/I/1083:1090 | GNRA | homologous HL_7A0S_026 HL_34789.6 | |
| HL_9E16_032 | 1/I/1107:1114 | No text annotation | homologous HL_8B0X_058 HL_47171.3 | |
| HL_9E16_036 | 1/I/1353:1358 | GNRA | homologous HL_7A0S_031 HL_34789.6 | |
| HL_9E16_037 | 1/I/1412:1420 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.7 | |
| HL_9E16_038 | 1/I/1455:1461 | No text annotation | homologous HL_8B0X_061 HL_49081.2 | |
| HL_9E16_039 | 1/I/1494:1499 | No text annotation | homologous HL_8B0X_062 HL_34789.6 | |
| HL_9E16_040 | 1/I/1520:1529 | No text annotation | homologous HL_8B0X_063 HL_77449.3 | |
| HL_9E16_042 | 1/I/1688:1699 | Pseudoknot | homologous HL_7A0S_036 HL_00824.1 | |
| HL_9E16_043 | 1/I/1729:1735 | No text annotation | homologous HL_8B0X_065 HL_49081.2 | |
| HL_9E16_045 | 1/I/1802:1805 | No text annotation | homologous HL_8B0X_067 HL_90436.5 | |
| HL_9E16_046 | 1/I/1847:1854 | No text annotation | homologous HL_8B0X_068 HL_28592.4 | |
| HL_9E16_049 | 1/I/1961:1967 | No text annotation | geometric HL_7ENI_002 HL_21043.1 | |
| HL_9E16_050 | 1/I/1986:1990 | No text annotation | homologous HL_8B0X_072 HL_80709.5 | |
| HL_9E16_051 | 1/I/2011:2021 | No text annotation | homologous HL_8B0X_073 HL_87681.3 | |
| HL_9E16_052 | 1/I/2040:2045 | No text annotation | homologous HL_8B0X_074 HL_37569.4 | |
| HL_9E16_054 | 1/I/2148:2158 | No text annotation | homologous HL_8B0X_076 HL_82185.3 | |
| HL_9E16_055 | 1/I/2187:2195 | No text annotation | homologous HL_8B0X_077 HL_33350.1 | |
| HL_9E16_056 | 1/I/2265:2274 | No text annotation | homologous HL_8B0X_078 HL_78372.3 | |
| HL_9E16_059 | 1/I/2486:2494 | LSU P loop | homologous HL_8B0X_080 HL_11974.4 | |
| HL_9E16_061 | 1/I/2542:2550 | No text annotation | homologous HL_8B0X_101 HL_02452.3 | |
| HL_9E16_062 | 1/I/2562:2569 | No text annotation | homologous HL_8B0X_083 HL_52651.4 | |
| HL_9E16_064 | 1/I/2612:2617 | No text annotation | homologous HL_8B0X_085 HL_34789.6 | |
| HL_9E16_065 | 1/I/2642:2651 | No text annotation | homologous HL_8B0X_086 HL_51853.2 | |
| HL_9E16_066 | 1/I/2709:2717 | No text annotation | homologous HL_8B0X_087 HL_52011.3 | |
| HL_9E16_067 | 1/I/2766:2773 | No text annotation | homologous HL_8B0X_088 HL_02262.1 | |
| HL_9E16_068 | 1/I/2789:2795 | LSU A loop | homologous HL_7A0S_061 HL_02262.1 | |
| HL_9E16_069 | 1/I/2832:2837 | GNRA | homologous HL_7A0S_062 HL_34789.6 | |
| HL_9E16_070 | 1/I/2896:2901 | No text annotation | homologous HL_8B0X_091 HL_34789.6 | |
| HL_9E16_072 | 1/I/2983:2997 | No text annotation | homologous HL_8B0X_093 HL_53269.4 | |
| HL_9E16_075 | 1/I/3091:3096 | No text annotation | homologous HL_8B0X_096 HL_34789.6 | |
| HL_9E16_076 | 1/a/15:25 | No text annotation | homologous HL_8B0X_001 HL_73535.3 | |
| HL_9E16_078 | 1/a/154:159 | No text annotation | homologous HL_8B0X_002 HL_34789.6 | |
| HL_9E16_084 | 1/a/341:346 | No text annotation | homologous HL_8B0X_008 HL_61337.6 | |
| HL_9E16_088 | 1/a/513:518 | No text annotation | homologous HL_8B0X_099 HL_34789.6 | |
| HL_9E16_090 | 1/a/680:689 | No text annotation | homologous HL_8B0X_014 HL_38491.4 | |
| HL_9E16_091 | 1/a/717:722 | No text annotation | homologous HL_8B0X_015 HL_34789.6 | |
| HL_9E16_092 | 1/a/777:787 | No text annotation | homologous HL_8B0X_016 HL_38491.4 | |
| HL_9E16_094 | 1/a/855:860 | No text annotation | homologous HL_8B0X_017 HL_34789.6 | |
| HL_9E16_095 | 1/a/890:895 | No text annotation | homologous HL_8B0X_018 HL_34789.6 | |
| HL_9E16_096 | 1/a/956:965 | No text annotation | homologous HL_8B0X_019 HL_97521.3 | |
| HL_9E16_098 | 1/a/1080:1087 | No text annotation | homologous HL_8B0X_022 HL_63894.4 | |
| HL_9E16_099 | 1/a/1125:1132 | No text annotation | ||
| HL_9E16_100 | 1/a/1157:1163 | No text annotation | homologous HL_8B0X_024 HL_34789.6 | |
| HL_9E16_102 | 1/a/1306:1315 | No text annotation | homologous HL_8B0X_026 HL_93658.1 | |
| HL_9E16_103 | 1/a/1348:1359 | No text annotation | ||
| HL_9E16_105 | 1/a/1508:1513 | No text annotation | homologous HL_8B0X_029 HL_34789.6 | |
| HL_9E16_106 | 1/n/13:23 | tRNA D-loop | homologous HL_7UQ6_001 HL_20490.1 | |
| HL_9E16_107 | 1/n/32:40 | tRNA anticodon loop | homologous HL_5UD5_002 HL_87306.2 | |
| HL_9E16_108 | 1/n/54:62 | T-loop with 2 stacked bulged bases | homologous HL_4YYE_003 HL_33597.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9E16_004 | No text annotation | ||
| HL_9E16_005 | No text annotation | ||
| HL_9E16_011 | No text annotation | ||
| HL_9E16_012 | Pseudoknot geometry | ||
| HL_9E16_013 | No text annotation | ||
| HL_9E16_016 | No text annotation | ||
| HL_9E16_021 | No text annotation | ||
| HL_9E16_023 | No text annotation | ||
| HL_9E16_025 | No text annotation | ||
| HL_9E16_026 | GNRA | ||
| HL_9E16_027 | No text annotation | ||
| HL_9E16_029 | No text annotation | ||
| HL_9E16_033 | No text annotation | ||
| HL_9E16_034 | No text annotation | ||
| HL_9E16_035 | No text annotation | ||
| HL_9E16_041 | UNCG variation | ||
| HL_9E16_044 | No text annotation | ||
| HL_9E16_047 | No text annotation | ||
| HL_9E16_048 | No text annotation | ||
| HL_9E16_053 | No text annotation | ||
| HL_9E16_057 | No text annotation | ||
| HL_9E16_058 | No text annotation | ||
| HL_9E16_060 | No text annotation | ||
| HL_9E16_063 | GNRA with extra cWW | ||
| HL_9E16_071 | No text annotation | ||
| HL_9E16_073 | No text annotation | ||
| HL_9E16_074 | No text annotation | ||
| HL_9E16_077 | No text annotation | ||
| HL_9E16_079 | No text annotation | ||
| HL_9E16_080 | No text annotation | ||
| HL_9E16_081 | No text annotation | ||
| HL_9E16_082 | No text annotation | ||
| HL_9E16_083 | No text annotation | ||
| HL_9E16_085 | No text annotation | ||
| HL_9E16_086 | No text annotation | ||
| HL_9E16_087 | No text annotation | ||
| HL_9E16_089 | No text annotation | ||
| HL_9E16_093 | No text annotation | ||
| HL_9E16_097 | No text annotation | ||
| HL_9E16_101 | No text annotation | ||
| HL_9E16_104 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9E16_001 | 1/B/2:4, 1/B/111:113 | Isolated non-canonical cWW pair | geometric IL_8QYX_171 IL_01003.6 | |
| IL_9E16_002 | 1/B/16:17, 1/B/64:66 | Major groove intercalation | homologous IL_8B0X_171 IL_14190.4 | |
| IL_9E16_003 | 1/B/22:28, 1/B/54:59 | No text annotation | geometric IL_9E6Q_106 IL_41504.2 | |
| IL_9E16_004 | 1/B/29:30, 1/B/50:53 | No text annotation | homologous IL_8QYX_167 IL_73108.4 | |
| IL_9E16_005 | 1/B/33:37, 1/B/43:47 | Symmetric double minor groove platform | homologous IL_8QYX_168 IL_58103.14 | |
| IL_9E16_006 | 1/B/70:78, 1/B/93:101 | Bacterial 5S Loop E | homologous IL_8B0X_175 IL_71138.1 | |
| IL_9E16_007 | 1/I/24:30, 1/I/598:604 | No text annotation | homologous IL_8B0X_065 IL_22311.3 | |
| IL_9E16_008 | 1/I/36:37, 1/I/531:533 | Single bulged A | homologous IL_8B0X_066 IL_14190.4 | |
| IL_9E16_012 | 1/I/190:196, 1/I/203:210 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8B0X_070 IL_62167.5 | |
| IL_9E16_015 | 1/I/323:325, 1/I/451:455 | No text annotation | geometric IL_7ENI_001 IL_70784.2 | |
| IL_9E16_016 | 1/I/357:365, 1/I/439:440 | No text annotation | ||
| IL_9E16_019 | 1/I/383:385, 1/I/398:399 | Single bulged U | geometric IL_3TZR_002 IL_97561.7 | |
| IL_9E16_020 | 1/I/570:573, 1/I/584:597 | No text annotation | geometric IL_8GLP_019 IL_44923.3 | |
| IL_9E16_026 | 1/I/693:695, 1/I/794:795 | Single bulged A | homologous IL_7A0S_012 IL_14190.4 | |
| IL_9E16_029 | 1/I/803:807, 1/I/928:935 | No text annotation | homologous IL_8B0X_080 IL_73855.3 | |
| IL_9E16_030 | 1/I/826:827, 1/I/892:894 | Single bulged A | homologous IL_7A0S_016 IL_14190.4 | |
| IL_9E16_032 | 1/I/832:836, 1/I/853:857 | No text annotation | homologous IL_8B0X_083 IL_15190.4 | |
| IL_9E16_033 | 1/I/867:869, 1/I/886:887 | Major groove platform | homologous IL_8B0X_084 IL_48076.10 | |
| IL_9E16_034 | 1/I/904:906, 1/I/916:920 | Multiple bulged bases | homologous IL_7A0S_021 IL_89509.3 | |
| IL_9E16_037 | 1/I/985:991, 1/I/1044:1050 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8B0X_090 IL_94128.3 | |
| IL_9E16_038 | 1/I/991:992, 1/I/1042:1044 | Minor groove platform | homologous IL_7A0S_028 IL_98469.1 | |
| IL_9E16_039 | 1/I/993:998, 1/I/1038:1041 | C-loop | homologous IL_7A0S_029 IL_16301.3 | |
| IL_9E16_044 | 1/I/1127:1131, 1/I/1283:1287 | UAA/GAN | homologous IL_8B0X_097 IL_08938.3 | |
| IL_9E16_045 | 1/I/1133:1140, 1/I/1280:1281 | No text annotation | homologous IL_8B0X_098 IL_46868.2 | |
| IL_9E16_046 | 1/I/1140:1142, 1/I/1279:1280 | Single bulged U | homologous IL_8B0X_099 IL_97561.7 | |
| IL_9E16_047 | 1/I/1147:1153, 1/I/1269:1274 | Kink-turn related | homologous IL_8B0X_100 IL_57188.6 | |
| IL_9E16_048 | 1/I/1153:1159, 1/I/1253:1269 | No text annotation | homologous IL_8B0X_101 IL_50715.4 | |
| IL_9E16_049 | 1/I/1160:1163, 1/I/1250:1252 | No text annotation | homologous IL_8B0X_102 IL_76400.2 | |
| IL_9E16_050 | 1/I/1172:1180, 1/I/1237:1241 | Kink-turn | homologous IL_8B0X_104 IL_99692.4 | |
| IL_9E16_053 | 1/I/1328:1330, 1/I/1378:1381 | No text annotation | homologous IL_8B0X_105 IL_84227.1 | |
| IL_9E16_055 | 1/I/1393:1400, 1/I/2249:2255 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.5 | |
| IL_9E16_056 | 1/I/1450:1454, 1/I/1462:1464 | No text annotation | homologous IL_8B0X_110 IL_63596.14 | |
| IL_9E16_057 | 1/I/1482:1486, 1/I/1507:1511 | No text annotation | homologous IL_8B0X_111 IL_89021.4 | |
| IL_9E16_058 | 1/I/1488:1492, 1/I/1501:1505 | No text annotation | homologous IL_8B0X_112 IL_05821.3 | |
| IL_9E16_059 | 1/I/1544:1546, 1/I/1822:1824 | Isolated non-canonical cWW pair | geometric IL_4M4O_002 IL_01003.6 | |
| IL_9E16_067 | 1/I/1655:1659, 1/I/1814:1817 | No text annotation | geometric IL_8GLP_158 IL_46211.1 | |
| IL_9E16_068 | 1/I/1670:1673, 1/I/1794:1798 | tWW and near cWH | geometric IL_6DLR_005 IL_45860.1 | |
| IL_9E16_069 | 1/I/1675:1678, 1/I/1788:1792 | No text annotation | homologous IL_8B0X_116 IL_74317.1 | |
| IL_9E16_073 | 1/I/1726:1728, 1/I/1736:1737 | Single bulged A | geometric IL_4V9F_032 IL_14190.4 | |
| IL_9E16_076 | 1/I/1901:1904, 1/I/2231:2232 | Major groove platform; stack outside cWW | geometric IL_8B0X_125 IL_74641.4 | |
| IL_9E16_077 | 1/I/1901:1909, 1/I/2228:2232 | No text annotation | geometric IL_8B0X_180 IL_80252.3 | |
| IL_9E16_078 | 1/I/1904:1909, 1/I/2228:2231 | No text annotation | homologous IL_8B0X_126 IL_28217.3 | |
| IL_9E16_079 | 1/I/1921:1926, 1/I/1931:1937 | No text annotation | homologous IL_8B0X_127 IL_20700.3 | |
| IL_9E16_080 | 1/I/1947:1952, 1/I/1977:1980 | No text annotation | geometric IL_8B0X_115 IL_60418.1 | |
| IL_9E16_081 | 1/I/1952:1958, 1/I/1970:1977 | No text annotation | ||
| IL_9E16_082 | 1/I/2004:2005, 1/I/2218:2220 | Single bulged A | homologous IL_8B0X_131 IL_14190.4 | |
| IL_9E16_083 | 1/I/2032:2038, 1/I/2047:2055 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_9E16_084 | 1/I/2071:2074, 1/I/2140:2141 | No text annotation | homologous IL_8B0X_133 IL_55206.3 | |
| IL_9E16_085 | 1/I/2075:2076, 1/I/2136:2139 | No text annotation | homologous IL_8B0X_134 IL_71421.5 | |
| IL_9E16_086 | 1/I/2080:2083, 1/I/2131:2132 | No text annotation | homologous IL_8B0X_135 IL_73108.4 | |
| IL_9E16_087 | 1/I/2085:2089, 1/I/2125:2129 | UAA/GAN with extra stack | homologous IL_7A0S_069 IL_89021.4 | |
| IL_9E16_088 | 1/I/2090:2095, 1/I/2119:2124 | No text annotation | ||
| IL_9E16_089 | 1/I/2098:2101, 1/I/2112:2116 | No text annotation | homologous IL_8B0X_136 IL_77691.7 | |
| IL_9E16_090 | 1/I/2171:2172, 1/I/2202:2205 | Bulged stacked bases | geometric IL_7A0S_071 IL_24886.4 | |
| IL_9E16_091 | 1/I/2172:2183, 1/I/2199:2202 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_9E16_093 | 1/I/2292:2294, 1/I/2850:2853 | No text annotation | homologous IL_8B0X_140 IL_80025.3 | |
| IL_9E16_094 | 1/I/2307:2308, 1/I/2676:2679 | Minor groove platform | homologous IL_8B0X_143 IL_98469.1 | |
| IL_9E16_095 | 1/I/2318:2321, 1/I/2473:2477 | No text annotation | geometric IL_3NPQ_006 IL_39691.1 | |
| IL_9E16_096 | 1/I/2322:2324, 1/I/2470:2472 | Isolated non-canonical cWW pair | homologous IL_8B0X_145 IL_71625.5 | |
| IL_9E16_098 | 1/I/2439:2441, 1/I/2458:2459 | Single bulged U | homologous IL_8B0X_146 IL_97561.7 | |
| IL_9E16_099 | 1/I/2588:2591, 1/I/2602:2605 | Double sheared | homologous IL_8B0X_148 IL_58355.4 | |
| IL_9E16_100 | 1/I/2639:2641, 1/I/2652:2653 | Major groove platform | homologous IL_7A0S_082 IL_48076.10 | |
| IL_9E16_101 | 1/I/2691:2692, 1/I/2736:2738 | Single stack bend | homologous IL_7A0S_083 IL_15011.5 | |
| IL_9E16_102 | 1/I/2692:2693, 1/I/2734:2736 | Major groove platform | homologous IL_8B0X_184 IL_48076.10 | |
| IL_9E16_103 | 1/I/2695:2697, 1/I/2731:2732 | Major groove platform | homologous IL_7A0S_085 IL_48076.10 | |
| IL_9E16_104 | 1/I/2697:2699, 1/I/2727:2731 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.4 | |
| IL_9E16_105 | 1/I/2699:2701, 1/I/2725:2727 | Isolated non-canonical cWW pair | geometric IL_3BNN_005 IL_71625.5 | |
| IL_9E16_106 | 1/I/2704:2708, 1/I/2718:2722 | No text annotation | homologous IL_8B0X_153 IL_87767.4 | |
| IL_9E16_107 | 1/I/2745:2746, 1/I/2818:2820 | Major groove platform | homologous IL_7A0S_088 IL_46637.4 | |
| IL_9E16_108 | 1/I/2748:2750, 1/I/2812:2816 | No text annotation | homologous IL_8B0X_155 IL_30722.1 | |
| IL_9E16_109 | 1/I/2750:2751, 1/I/2809:2812 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.4 | |
| IL_9E16_110 | 1/I/2760:2761, 1/I/2778:2781 | No text annotation | homologous IL_8B0X_157 IL_94991.3 | |
| IL_9E16_111 | 1/I/2829:2830, 1/I/2839:2841 | Single bulged A | homologous IL_8B0X_159 IL_14190.4 | |
| IL_9E16_113 | 1/I/2890:2896, 1/I/2901:2906 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8B0X_161 IL_16458.6 | |
| IL_9E16_114 | 1/I/2918:2922, 1/I/2963:2965 | No text annotation | homologous IL_8B0X_162 IL_63596.14 | |
| IL_9E16_115 | 1/I/2925:2929, 1/I/2956:2960 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_82016.1 | |
| IL_9E16_116 | 1/I/2933:2934, 1/I/2949:2952 | No text annotation | homologous IL_8B0X_164 IL_44609.4 | |
| IL_9E16_117 | 1/I/2975:2980, 1/I/3000:3005 | No text annotation | homologous IL_8B0X_165 IL_91079.1 | |
| IL_9E16_119 | 1/I/3078:3080, 1/I/3106:3109 | Decoding loop related | homologous IL_7A0S_100 IL_05502.2 | |
| IL_9E16_120 | 1/I/3082:3087, 1/I/3100:3104 | No text annotation | homologous IL_7A0S_101 IL_48489.3 | |
| IL_9E16_121 | 1/a/33:35, 1/a/543:544 | Single bulged G | homologous IL_8B0X_001 IL_28408.4 | |
| IL_9E16_123 | 1/a/50:55, 1/a/358:360 | No text annotation | geometric IL_8B0X_003 IL_32983.3 | |
| IL_9E16_124 | 1/a/57:59, 1/a/355:356 | Minor groove platform | homologous IL_8B0X_004 IL_41261.1 | |
| IL_9E16_130 | 1/a/128:132, 1/a/226:229 | Minor groove platform related | homologous IL_8B0X_010 IL_60988.4 | |
| IL_9E16_131 | 1/a/143:149, 1/a/164:171 | No text annotation | homologous IL_8B0X_012 IL_24485.3 | |
| IL_9E16_132 | 1/a/241:246, 1/a/276:283 | Kink-turn with non-sequential stacking | homologous IL_8B0X_013 IL_46174.6 | |
| IL_9E16_134 | 1/a/291:292, 1/a/303:307 | No text annotation | homologous IL_8B0X_015 IL_06671.3 | |
| IL_9E16_137 | 1/a/374:375, 1/a/386:388 | Single bulged G | homologous IL_8B0X_018 IL_28408.4 | |
| IL_9E16_142 | 1/a/495:502, 1/a/531:532 | No text annotation | homologous IL_8B0X_023 IL_11411.3 | |
| IL_9E16_143 | 1/a/506:512, 1/a/519:527 | Kink-turn related | homologous IL_8B0X_024 IL_52042.3 | |
| IL_9E16_144 | 1/a/560:566, 1/a/873:874 | No text annotation | homologous IL_8B0X_025 IL_20847.3 | |
| IL_9E16_145 | 1/a/571:575, 1/a/748:752 | No text annotation | homologous IL_8B0X_026 IL_05821.3 | |
| IL_9E16_147 | 1/a/588:589, 1/a/631:634 | No text annotation | homologous IL_8B0X_028 IL_73108.4 | |
| IL_9E16_148 | 1/a/596:602, 1/a/620:624 | No text annotation | ||
| IL_9E16_149 | 1/a/648:649, 1/a/738:740 | Major groove platform | geometric IL_3NKB_002 IL_48076.10 | |
| IL_9E16_150 | 1/a/653:657, 1/a/731:734 | Tandem non-canonical cWW pairs | homologous IL_8B0X_032 IL_15225.4 | |
| IL_9E16_151 | 1/a/664:668, 1/a/704:708 | No text annotation | homologous IL_8B0X_176 IL_71154.5 | |
| IL_9E16_152 | 1/a/675:679, 1/a/690:697 | Kink-turn | homologous IL_8B0X_034 IL_71972.2 | |
| IL_9E16_153 | 1/a/765:769, 1/a/795:796 | No text annotation | homologous IL_8B0X_035 IL_29346.3 | |
| IL_9E16_154 | 1/a/770:774, 1/a/790:794 | No text annotation | homologous IL_8B0X_036 IL_05821.3 | |
| IL_9E16_155 | 1/a/880:887, 1/a/898:903 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8B0X_037 IL_84044.3 | |
| IL_9E16_156 | 1/a/915:916, 1/a/1386:1388 | Single bulged A | homologous IL_8B0X_038 IL_14190.4 | |
| IL_9E16_157 | 1/a/918:920, 1/a/1383:1384 | Single bulged G | homologous IL_8B0X_039 IL_28408.4 | |
| IL_9E16_158 | 1/a/926:928, 1/a/1373:1377 | No text annotation | homologous IL_8B0X_040 IL_03866.1 | |
| IL_9E16_159 | 1/a/946:947, 1/a/1218:1220 | Minor groove platform | homologous IL_8B0X_041 IL_98469.1 | |
| IL_9E16_160 | 1/a/986:993, 1/a/1032:1036 | No text annotation | ||
| IL_9E16_164 | 1/a/1039:1041, 1/a/1200:1201 | Single bulged U | homologous IL_8B0X_044 IL_97561.7 | |
| IL_9E16_165 | 1/a/1043:1047, 1/a/1196:1198 | No text annotation | homologous IL_8B0X_046 IL_82453.3 | |
| IL_9E16_166 | 1/a/1048:1049, 1/a/1191:1195 | Minor groove platform | homologous IL_8B0X_047 IL_41261.1 | |
| IL_9E16_167 | 1/a/1051:1052, 1/a/1187:1189 | Single bulged A | homologous IL_8B0X_048 IL_14190.4 | |
| IL_9E16_168 | 1/a/1052:1054, 1/a/1185:1187 | Isolated non-canonical cWW pair | homologous IL_8B0X_049 IL_71625.5 | |
| IL_9E16_172 | 1/a/1150:1153, 1/a/1167:1173 | No text annotation | geometric IL_8B0X_052 IL_32376.2 | |
| IL_9E16_173 | 1/a/1239:1245, 1/a/1276:1282 | No text annotation | homologous IL_8B0X_053 IL_12056.1 | |
| IL_9E16_174 | 1/a/1247:1250, 1/a/1269:1274 | No text annotation | ||
| IL_9E16_175 | 1/a/1251:1255, 1/a/1264:1268 | No text annotation | geometric IL_9PN5_228 IL_87767.4 | |
| IL_9E16_177 | 1/a/1392:1394, 1/a/1494:1497 | No text annotation | homologous IL_8B0X_057 IL_18228.3 | |
| IL_9E16_178 | 1/a/1394:1398, 1/a/1489:1494 | No text annotation | ||
| IL_9E16_179 | 1/a/1398:1400, 1/a/1487:1489 | Isolated non-canonical cWW pair | homologous IL_8B0X_177 IL_01003.6 | |
| IL_9E16_180 | 1/a/1400:1402, 1/a/1484:1487 | Decoding loop | geometric IL_4ZC7_003 IL_29925.3 | |
| IL_9E16_182 | 1/a/1409:1412, 1/a/1474:1477 | Double sheared | homologous IL_8B0X_061 IL_58355.4 | |
| IL_9E16_184 | 1/a/1423:1428, 1/a/1459:1463 | No text annotation | homologous IL_8B0X_062 IL_47352.3 | |
| IL_9E16_186 | 1/a/1433:1436, 1/a/1452:1454 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9E16_009 | Minor groove platform | ||
| IL_9E16_010 | Kink-turn | ||
| IL_9E16_011 | Single stack bend | ||
| IL_9E16_013 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_9E16_014 | No text annotation | ||
| IL_9E16_017 | No text annotation | ||
| IL_9E16_018 | No text annotation | ||
| IL_9E16_021 | Double sheared | ||
| IL_9E16_022 | Isolated cWH basepair | ||
| IL_9E16_023 | Isolated non-canonical cWW pair | ||
| IL_9E16_024 | Minor groove platform | ||
| IL_9E16_025 | No text annotation | ||
| IL_9E16_027 | No text annotation | ||
| IL_9E16_028 | Isolated non-canonical cWW pair | ||
| IL_9E16_031 | Single bulged G | ||
| IL_9E16_035 | Single stack bend | ||
| IL_9E16_036 | No text annotation | ||
| IL_9E16_040 | Isolated non-canonical cWW pair | ||
| IL_9E16_041 | No text annotation | ||
| IL_9E16_042 | Single bulged A | ||
| IL_9E16_043 | Single bulged C | ||
| IL_9E16_051 | No text annotation | ||
| IL_9E16_052 | No text annotation | ||
| IL_9E16_054 | Kink-turn | ||
| IL_9E16_060 | No text annotation | ||
| IL_9E16_061 | No text annotation | ||
| IL_9E16_062 | Partly complementary | ||
| IL_9E16_063 | No text annotation | ||
| IL_9E16_064 | Isolated non-canonical cWW pair | ||
| IL_9E16_065 | Isolated non-canonical cWW pair | ||
| IL_9E16_066 | No text annotation | ||
| IL_9E16_070 | No text annotation | ||
| IL_9E16_071 | No text annotation | ||
| IL_9E16_072 | No text annotation | ||
| IL_9E16_074 | No text annotation | ||
| IL_9E16_075 | No text annotation | ||
| IL_9E16_092 | Major groove platform | ||
| IL_9E16_097 | No text annotation | ||
| IL_9E16_112 | tSH-tHS-tHW | ||
| IL_9E16_118 | No text annotation | ||
| IL_9E16_122 | Isolated cWH basepair | ||
| IL_9E16_125 | No text annotation | ||
| IL_9E16_126 | No text annotation | ||
| IL_9E16_127 | No text annotation | ||
| IL_9E16_128 | Single stack bend | ||
| IL_9E16_129 | Multiple bulged bases | ||
| IL_9E16_133 | No text annotation | ||
| IL_9E16_135 | Single bulged U | ||
| IL_9E16_136 | No text annotation | ||
| IL_9E16_138 | No text annotation | ||
| IL_9E16_139 | No text annotation | ||
| IL_9E16_140 | tWW-tWH-tHS | ||
| IL_9E16_141 | No text annotation | ||
| IL_9E16_146 | Major groove platform | ||
| IL_9E16_161 | No text annotation | ||
| IL_9E16_162 | Isolated cWH basepair | ||
| IL_9E16_163 | Isolated non-canonical cWW pair | ||
| IL_9E16_169 | No text annotation | ||
| IL_9E16_170 | No text annotation | ||
| IL_9E16_171 | No text annotation | ||
| IL_9E16_176 | No text annotation | ||
| IL_9E16_181 | Isolated non-canonical cWW pair | ||
| IL_9E16_183 | Tandem non-canonical cWW pairs with external base triple | ||
| IL_9E16_185 | Isolated non-canonical cWW pair | ||
| IL_9E16_187 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9E16_001 | 1/B/9:15, 1/B/67:69, 1/B/102:106 | No text annotation | homologous J3_8B0X_026 NA | |
| J3_9E16_002 | 1/I/30:31, 1/I/563:570, 1/I/597:598 | No text annotation | geometric J3_8B0X_014 J3_68715.3 | |
| J3_9E16_003 | 1/I/30:31, 1/I/563:573, 1/I/584:598 | No text annotation | homologous J3_8B0X_032 J3_17917.3 | |
| J3_9E16_004 | 1/I/32:35, 1/I/534:550, 1/I/557:562 | No text annotation | homologous J3_8B0X_033 J3_07616.3 | |
| J3_9E16_006 | 1/I/318:320, 1/I/458:464, 1/I/488:493 | No text annotation | ||
| J3_9E16_008 | 1/I/379:383, 1/I/399:408, 1/I/420:424 | No text annotation | homologous J3_8B0X_034 J3_77124.1 | |
| J3_9E16_009 | 1/I/812:818, 1/I/902:904, 1/I/920:923 | No text annotation | homologous J3_8B0X_016 J3_46658.3 | |
| J3_9E16_010 | 1/I/827:829, 1/I/861:865, 1/I/889:892 | No text annotation | homologous J3_8B0X_017 J3_69816.3 | |
| J3_9E16_012 | 1/I/1429:1434, 1/I/1860:1862, 1/I/1874:1877 | No text annotation | homologous J3_8B0X_018 J3_32852.7 | |
| J3_9E16_013 | 1/I/1437:1440, 1/I/1840:1846, 1/I/1855:1857 | No text annotation | homologous J3_8B0X_019 J3_47341.1 | |
| J3_9E16_014 | 1/I/1475:1481, 1/I/1512:1516, 1/I/1533:1534 | No text annotation | homologous J3_7A0S_018 J3_94309.3 | |
| J3_9E16_015 | 1/I/1547:1553, 1/I/1652:1654, 1/I/1818:1821 | No text annotation | ||
| J3_9E16_016 | 1/I/1663:1667, 1/I/1801:1802, 1/I/1805:1810 | No text annotation | geometric J3_9E6Q_013 J3_08594.3 | |
| J3_9E16_017 | 1/I/2328:2330, 1/I/2433:2437, 1/I/2461:2466 | No text annotation | homologous J3_8B0X_021 J3_17460.1 | |
| J3_9E16_018 | 1/I/2520:2522, 1/I/2622:2633, 1/I/2659:2665 | No text annotation | homologous J3_8B0X_036 J3_04772.3 | |
| J3_9E16_019 | 1/I/2533:2537, 1/I/2555:2561, 1/I/2570:2575 | No text annotation | homologous J3_8B0X_037 NA | |
| J3_9E16_020 | 1/I/2755:2758, 1/I/2783:2785, 1/I/2799:2805 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_9E16_023 | 1/a/49:55, 1/a/358:366, 1/a/392:394 | No text annotation | homologous J3_8B0X_027 J3_63856.3 | |
| J3_9E16_024 | 1/a/577:579, 1/a/642:646, 1/a/742:746 | No text annotation | homologous J3_8B0X_028 J3_17385.7 | |
| J3_9E16_025 | 1/a/663:664, 1/a/708:716, 1/a/723:725 | No text annotation | homologous J3_8B0X_003 J3_74074.1 | |
| J3_9E16_026 | 1/a/817:820, 1/a/850:854, 1/a/861:867 | No text annotation | homologous J3_8B0X_004 J3_02285.1 | |
| J3_9E16_027 | 1/a/929:932, 1/a/1336:1342, 1/a/1365:1372 | No text annotation | homologous J3_8B0X_005 J3_85722.3 | |
| J3_9E16_028 | 1/a/936:939, 1/a/1227:1229, 1/a/1329:1332 | No text annotation | homologous J3_8B0X_006 J3_44359.3 | |
| J3_9E16_029 | 1/a/948:955, 1/a/966:977, 1/a/1213:1217 | No text annotation | homologous J3_8B0X_007 J3_88451.3 | |
| J3_9E16_030 | 1/a/983:986, 1/a/1036:1038, 1/a/1202:1207 | No text annotation | geometric J3_8B0X_008 J3_84394.1 | |
| J3_9E16_031 | 1/a/983:993, 1/a/1032:1038, 1/a/1202:1207 | No text annotation | ||
| J3_9E16_032 | 1/a/1054:1059, 1/a/1098:1104, 1/a/1179:1185 | No text annotation | homologous J3_8B0X_010 J3_01343.1 | |
| J3_9E16_033 | 1/a/1107:1109, 1/a/1147:1150, 1/a/1173:1176 | No text annotation | geometric J3_8B0X_012 J3_82365.7 | |
| J3_9E16_034 | 1/a/1107:1109, 1/a/1147:1153, 1/a/1167:1176 | No text annotation | homologous J3_8B0X_031 J3_40706.2 | |
| J3_9E16_035 | 1/a/1229:1233, 1/a/1288:1295, 1/a/1326:1329 | No text annotation | homologous J3_8B0X_013 J3_03192.3 | |
| J4_9E16_001 | 1/I/270:275, 1/I/313:318, 1/I/493:495, 1/I/510:513 | No text annotation | ||
| J4_9E16_002 | 1/I/379:383, 1/I/399:402, 1/I/406:408, 1/I/420:424 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_9E16_003 | 1/I/1401:1407, 1/I/1425:1426, 1/I/1880:1883, 1/I/2247:2248 | No text annotation | homologous J4_7A0S_004 J4_19484.1 | |
| J4_9E16_004 | 1/I/1441:1445, 1/I/1469:1474, 1/I/1535:1536, 1/I/1832:1839 | No text annotation | ||
| J4_9E16_006 | 1/I/2005:2010, 1/I/2022:2026, 1/I/2061:2064, 1/I/2213:2218 | No text annotation | ||
| J4_9E16_007 | 1/I/2067:2069, 1/I/2143:2144, 1/I/2162:2171, 1/I/2205:2210 | No text annotation | homologous J4_8B0X_012 J4_42306.3 | |
| J4_9E16_008 | 1/I/2523:2527, 1/I/2581:2585, 1/I/2608:2610, 1/I/2619:2621 | No text annotation | homologous J4_8B0X_013 J4_98139.1 | |
| J4_9E16_009 | 1/I/2880:2884, 1/I/2912:2914, 1/I/2969:2973, 1/I/3007:3010 | No text annotation | ||
| J4_9E16_010 | 1/a/110:118, 1/a/237:239, 1/a/285:288, 1/a/310:311 | No text annotation | ||
| J4_9E16_012 | 1/a/566:568, 1/a/755:760, 1/a/801:812, 1/a/872:873 | No text annotation | homologous J4_8B0X_003 J4_14595.3 | |
| J4_9E16_013 | 1/n/7:10, 1/n/26:28, 1/n/44:50, 1/n/66:67 | No text annotation | homologous J4_9H3G_015 NA | |
| J5_9E16_001 | 1/I/47:54, 1/I/116:121, 1/I/130:131, 1/I/150:152, 1/I/178:180 | No text annotation | homologous J5_8B0X_004 J5_27223.3 | |
| J5_9E16_002 | 1/I/270:275, 1/I/313:320, 1/I/458:464, 1/I/488:495, 1/I/510:513 | No text annotation | ||
| J5_9E16_003 | 1/I/619:621, 1/I/662:666, 1/I/679:681, 1/I/1392:1393, 1/I/2255:2256 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_9E16_004 | 1/I/686:691, 1/I/797:800, 1/I/938:941, 1/I/1327:1328, 1/I/1381:1387 | No text annotation | ||
| J5_9E16_005 | 1/I/704:708, 1/I/727:732, 1/I/739:742, 1/I/754:761, 1/I/778:785 | No text annotation | ||
| J5_9E16_006 | 1/I/1909:1917, 1/I/1941:1942, 1/I/1985:1986, 1/I/1990:1998, 1/I/2226:2228 | No text annotation | homologous J5_8B0X_007 J5_99177.3 | |
| J5_9E16_007 | 1/I/2295:2302, 1/I/2684:2691, 1/I/2738:2745, 1/I/2820:2826, 1/I/2844:2849 | No text annotation | ||
| J5_9E16_008 | 1/I/2311:2314, 1/I/2481:2484, 1/I/2496:2497, 1/I/2519:2520, 1/I/2665:2673 | No text annotation | homologous J5_8B0X_009 J5_39529.2 | |
| J5_9E16_009 | 1/a/39:42, 1/a/402:405, 1/a/435:439, 1/a/488:491, 1/a/536:539 | No text annotation | ||
| J5_9E16_010 | 1/a/39:42, 1/a/402:405, 1/a/435:441, 1/a/483:491, 1/a/536:539 | No text annotation | homologous J5_8B0X_002 NA | |
| J6_9E16_001 | 1/I/45:46, 1/I/181:185, 1/I/216:226, 1/I/233:237, 1/I/264:268, 1/I/515:522 | No text annotation | ||
| J6_9E16_002 | 1/I/2311:2314, 1/I/2481:2484, 1/I/2496:2497, 1/I/2519:2522, 1/I/2622:2633, 1/I/2659:2673 | No text annotation | ||
| J7_9E16_001 | 1/I/945:951, 1/I/964:965, 1/I/1071:1074, 1/I/1100:1105, 1/I/1116:1120, 1/I/1293:1294, 1/I/1317:1323 | No text annotation | ||
| J8_9E16_001 | 1/I/7:15, 1/I/613:619, 1/I/2256:2261, 1/I/2278:2281, 1/I/2863:2868, 1/I/3026:3029, 1/I/3041:3046, 1/I/3124:3130 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9E16_005 | No text annotation | ||
| J3_9E16_007 | No text annotation | ||
| J3_9E16_011 | No text annotation | ||
| J3_9E16_021 | No text annotation | ||
| J3_9E16_022 | No text annotation | ||
| J4_9E16_005 | No text annotation | ||
| J4_9E16_011 | No text annotation | ||
| J5_9E16_011 | No text annotation |
Coloring options: