HL_9E16_028

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUUGAAGAC

Length

10 nucleotides

Bulged bases

9E16|1|I|U|876, 9E16|1|I|G|880, 9E16|1|I|A|881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E16_028 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.109

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.3

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

9E16|1|I|G|873
9E16|1|I|G|874
9E16|1|I|U|875
9E16|1|I|U|876
9E16|1|I|G|877
9E16|1|I|A|878
9E16|1|I|A|879
9E16|1|I|G|880
9E16|1|I|A|881
9E16|1|I|C|882

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 1

Ribosome-tunnel occlusion factor (RTOF)

Chain 2

50S ribosomal protein L34

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L22