HL_9E16_051

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

9E16|1|I|A|2014, 9E16|1|I|C|2015, 9E16|1|I|U|2016, 9E16|1|I|A|2020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E16_051 not in the Motif Atlas

Homologous match to HL_8B0X_073

Geometric discrepancy: 0.0603

The information below is about HL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.3

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

9E16|1|I|U|2011
9E16|1|I|U|2012
9E16|1|I|U|2013
9E16|1|I|A|2014
9E16|1|I|C|2015
9E16|1|I|U|2016
9E16|1|I|A|2017
9E16|1|I|A|2018
9E16|1|I|A|2019
9E16|1|I|A|2020
9E16|1|I|A|2021

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 1

Ribosome-tunnel occlusion factor (RTOF)

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2