HL_9E16_054

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

9E16|1|I|A|2151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E16_054 not in the Motif Atlas

Homologous match to HL_8B0X_076

Geometric discrepancy: 0.4833

The information below is about HL_8B0X_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.3

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9E16|1|I|G|2148
9E16|1|I|U|2149
9E16|1|I|A|2150
9E16|1|I|A|2151
9E16|1|I|C|2152
9E16|1|I|U|2153
9E16|1|I|A|2154
9E16|1|I|U|2155
9E16|1|I|A|2156
9E16|1|I|A|2157
9E16|1|I|C|2158

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA