HL_9E16_056

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

9E16|1|I|A|2268, 9E16|1|I|A|2269, 9E16|1|I|G|2270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E16_056 not in the Motif Atlas

Homologous match to HL_8B0X_078

Geometric discrepancy: 0.1412

The information below is about HL_8B0X_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

9E16|1|I|G|2265
9E16|1|I|U|2266
9E16|1|I|A|2267
9E16|1|I|A|2268
9E16|1|I|A|2269
9E16|1|I|G|2270
9E16|1|I|A|2271
9E16|1|I|U|2272
9E16|1|I|G|2273
9E16|1|I|C|2274

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 7

50S ribosomal protein bL37

Chain D

50S ribosomal protein L3