HL_9E16_106
3D structure
- PDB id
- 9E16 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9E16|1|n|G|19, 9E16|1|n|G|20, 9E16|1|n|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9E16_106 not in the Motif Atlas
- Homologous match to HL_7UQ6_001
- Geometric discrepancy: 0.131
- The information below is about HL_7UQ6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9E16|1|n|C|13
9E16|1|n|A|14
9E16|1|n|G|15
9E16|1|n|C|16
9E16|1|n|C|17
9E16|1|n|U|18
9E16|1|n|G|19
9E16|1|n|G|20
9E16|1|n|U|21
9E16|1|n|A|22
9E16|1|n|G|23
Current chains
- Chain n
- E-tRNA
Nearby chains
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: