HL_9E1S_009

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9E1S|1|I|A|198, 9E1S|1|I|A|201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_009 not in the Motif Atlas

Homologous match to HL_8B0X_038

Geometric discrepancy: 0.1603

The information below is about HL_8B0X_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9E1S|1|I|G|196
9E1S|1|I|A|197
9E1S|1|I|A|198
9E1S|1|I|A|199
9E1S|1|I|C|200
9E1S|1|I|A|201
9E1S|1|I|U|202
9E1S|1|I|C|203

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain y

50S ribosomal protein bL28-c minus