9E1S Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9E1S_001 | 1/B/33:47 | No text annotation | geometric HL_5NS3_003 HL_97756.4 | |
| HL_9E1S_002 | 1/B/37:43 | No text annotation | homologous HL_9H3G_074 HL_59381.4 | |
| HL_9E1S_003 | 1/B/83:88 | No text annotation | geometric HL_8GLP_092 HL_34789.6 | |
| HL_9E1S_004 | 1/I/59:68 | No text annotation | homologous HL_8B0X_033 HL_35677.5 | |
| HL_9E1S_005 | 1/I/87:96 | No text annotation | homologous HL_8B0X_034 HL_65821.1 | |
| HL_9E1S_006 | 1/I/123:128 | No text annotation | homologous HL_8B0X_035 HL_82710.4 | |
| HL_9E1S_007 | 1/I/137:144 | GNRA with tandem sheared | geometric HL_4WF9_004 HL_98423.5 | |
| HL_9E1S_009 | 1/I/196:203 | No text annotation | homologous HL_8B0X_038 HL_02262.1 | |
| HL_9E1S_010 | 1/I/227:232 | No text annotation | homologous HL_8B0X_039 HL_63151.1 | |
| HL_9E1S_011 | 1/I/248:254 | No text annotation | homologous HL_8B0X_040 HL_76371.4 | |
| HL_9E1S_014 | 1/I/388:395 | No text annotation | homologous HL_8B0X_041 HL_13999.5 | |
| HL_9E1S_015 | 1/I/402:406 | No text annotation | geometric HL_8B0X_042 HL_75660.10 | |
| HL_9E1S_016 | 1/I/410:418 | No text annotation | homologous HL_8B0X_043 HL_27670.6 | |
| HL_9E1S_017 | 1/I/471:481 | No text annotation | homologous HL_8B0X_044 HL_91503.8 | |
| HL_9E1S_018 | 1/I/499:506 | No text annotation | homologous HL_8B0X_045 HL_30680.5 | |
| HL_9E1S_019 | 1/I/551:556 | No text annotation | homologous HL_8B0X_046 HL_34789.6 | |
| HL_9E1S_020 | 1/I/576:581 | GNRA | homologous HL_7A0S_016 HL_34789.6 | |
| HL_9E1S_022 | 1/I/668:677 | T-loop with 2 stacked bulged bases | homologous HL_8B0X_048 HL_33597.7 | |
| HL_9E1S_023 | 1/I/716:719 | No text annotation | ||
| HL_9E1S_024 | 1/I/733:738 | GNRA | homologous HL_7A0S_020 HL_34789.6 | |
| HL_9E1S_028 | 1/I/873:882 | No text annotation | homologous HL_7A0S_022 HL_50204.3 | |
| HL_9E1S_029 | 1/I/908:914 | No text annotation | homologous HL_8B0X_054 HL_79773.1 | |
| HL_9E1S_030 | 1/I/955:960 | No text annotation | homologous HL_8B0X_055 HL_27530.3 | |
| HL_9E1S_031 | 1/I/1083:1090 | GNRA | homologous HL_7A0S_026 HL_34789.6 | |
| HL_9E1S_032 | 1/I/1107:1114 | No text annotation | homologous HL_8B0X_058 HL_47171.3 | |
| HL_9E1S_036 | 1/I/1353:1358 | GNRA | homologous HL_7A0S_031 HL_34789.6 | |
| HL_9E1S_037 | 1/I/1412:1420 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.7 | |
| HL_9E1S_038 | 1/I/1455:1461 | No text annotation | homologous HL_8B0X_061 HL_49081.2 | |
| HL_9E1S_039 | 1/I/1494:1499 | No text annotation | homologous HL_8B0X_062 HL_34789.6 | |
| HL_9E1S_042 | 1/I/1688:1699 | Pseudoknot | homologous HL_7A0S_036 HL_00824.1 | |
| HL_9E1S_043 | 1/I/1729:1735 | No text annotation | homologous HL_8B0X_065 HL_49081.2 | |
| HL_9E1S_045 | 1/I/1802:1805 | No text annotation | homologous HL_8B0X_067 HL_90436.5 | |
| HL_9E1S_046 | 1/I/1847:1854 | No text annotation | homologous HL_7A0S_040 HL_28592.4 | |
| HL_9E1S_047 | 1/I/1865:1871 | No text annotation | homologous HL_8B0X_069 HL_34789.6 | |
| HL_9E1S_051 | 1/I/2011:2021 | No text annotation | homologous HL_8B0X_073 HL_87681.3 | |
| HL_9E1S_052 | 1/I/2040:2045 | GNRA | homologous HL_7A0S_046 HL_34789.6 | |
| HL_9E1S_055 | 1/I/2187:2195 | No text annotation | homologous HL_8B0X_077 HL_33350.1 | |
| HL_9E1S_056 | 1/I/2265:2274 | No text annotation | homologous HL_7A0S_049 HL_78372.3 | |
| HL_9E1S_059 | 1/I/2486:2494 | LSU P loop | homologous HL_8B0X_080 HL_11974.4 | |
| HL_9E1S_060 | 1/I/2502:2514 | No text annotation | homologous HL_8B0X_081 HL_02042.3 | |
| HL_9E1S_062 | 1/I/2562:2569 | No text annotation | homologous HL_8B0X_083 HL_52651.4 | |
| HL_9E1S_064 | 1/I/2612:2617 | GNRA | homologous HL_7A0S_057 HL_34789.6 | |
| HL_9E1S_065 | 1/I/2642:2651 | No text annotation | homologous HL_8B0X_086 HL_51853.2 | |
| HL_9E1S_066 | 1/I/2709:2717 | No text annotation | homologous HL_8B0X_087 HL_52011.3 | |
| HL_9E1S_067 | 1/I/2766:2773 | No text annotation | homologous HL_8B0X_088 HL_02262.1 | |
| HL_9E1S_068 | 1/I/2789:2795 | LSU A loop | homologous HL_7A0S_061 HL_02262.1 | |
| HL_9E1S_070 | 1/I/2896:2901 | No text annotation | homologous HL_8B0X_091 HL_34789.6 | |
| HL_9E1S_071 | 1/I/2939:2944 | No text annotation | homologous HL_8B0X_092 HL_12125.4 | |
| HL_9E1S_072 | 1/I/2983:2997 | No text annotation | homologous HL_8B0X_093 HL_53269.4 | |
| HL_9E1S_073 | 1/I/3032:3038 | No text annotation | ||
| HL_9E1S_074 | 1/I/3054:3062 | No text annotation | homologous HL_8B0X_095 HL_37889.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9E1S_008 | No text annotation | ||
| HL_9E1S_012 | No text annotation | ||
| HL_9E1S_013 | No text annotation | ||
| HL_9E1S_021 | No text annotation | ||
| HL_9E1S_025 | GNRA | ||
| HL_9E1S_026 | No text annotation | ||
| HL_9E1S_027 | No text annotation | ||
| HL_9E1S_033 | No text annotation | ||
| HL_9E1S_034 | GNRA related | ||
| HL_9E1S_035 | No text annotation | ||
| HL_9E1S_040 | No text annotation | ||
| HL_9E1S_041 | No text annotation | ||
| HL_9E1S_044 | No text annotation | ||
| HL_9E1S_048 | No text annotation | ||
| HL_9E1S_049 | No text annotation | ||
| HL_9E1S_050 | No text annotation | ||
| HL_9E1S_053 | No text annotation | ||
| HL_9E1S_054 | No text annotation | ||
| HL_9E1S_057 | No text annotation | ||
| HL_9E1S_058 | No text annotation | ||
| HL_9E1S_061 | No text annotation | ||
| HL_9E1S_063 | GNRA with extra cWW | ||
| HL_9E1S_069 | No text annotation | ||
| HL_9E1S_075 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9E1S_001 | 1/B/2:4, 1/B/111:113 | Isolated non-canonical cWW pair | geometric IL_8K85_006 IL_01003.6 | |
| IL_9E1S_005 | 1/B/33:37, 1/B/43:47 | Symmetric double minor groove platform | homologous IL_8QYX_168 IL_58103.14 | |
| IL_9E1S_006 | 1/B/70:78, 1/B/93:101 | Bacterial 5S Loop E | homologous IL_8B0X_175 IL_71138.1 | |
| IL_9E1S_007 | 1/I/24:30, 1/I/598:604 | No text annotation | homologous IL_8B0X_065 IL_22311.3 | |
| IL_9E1S_010 | 1/I/81:85, 1/I/98:105 | Kink-turn | geometric IL_6UFG_001 IL_71972.2 | |
| IL_9E1S_011 | 1/I/185:186, 1/I/214:216 | Single stack bend | homologous IL_8B0X_069 IL_15011.5 | |
| IL_9E1S_012 | 1/I/190:196, 1/I/203:210 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8B0X_070 IL_62167.5 | |
| IL_9E1S_013 | 1/I/241:247, 1/I/255:260 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8B0X_071 IL_02666.3 | |
| IL_9E1S_014 | 1/I/283:292, 1/I/300:305 | No text annotation | ||
| IL_9E1S_019 | 1/I/383:385, 1/I/398:399 | Single bulged U | geometric IL_3TZR_002 IL_97561.7 | |
| IL_9E1S_020 | 1/I/570:573, 1/I/584:597 | No text annotation | geometric IL_8GLP_019 IL_44923.3 | |
| IL_9E1S_021 | 1/I/624:627, 1/I/656:659 | Double sheared | homologous IL_8B0X_076 IL_58355.4 | |
| IL_9E1S_023 | 1/I/629:631, 1/I/652:654 | Isolated non-canonical cWW pair | geometric IL_3GM7_002 IL_01003.6 | |
| IL_9E1S_025 | 1/I/666:668, 1/I/677:679 | No text annotation | homologous IL_8B0X_077 IL_01334.1 | |
| IL_9E1S_026 | 1/I/693:695, 1/I/794:795 | Single bulged A | homologous IL_7A0S_012 IL_14190.4 | |
| IL_9E1S_027 | 1/I/709:713, 1/I/722:726 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
| IL_9E1S_029 | 1/I/803:807, 1/I/928:935 | No text annotation | homologous IL_8B0X_080 IL_73855.3 | |
| IL_9E1S_030 | 1/I/826:827, 1/I/892:894 | Single bulged A | homologous IL_8B0X_081 IL_14190.4 | |
| IL_9E1S_034 | 1/I/904:906, 1/I/916:920 | Multiple bulged bases | homologous IL_7A0S_021 IL_89509.3 | |
| IL_9E1S_035 | 1/I/966:967, 1/I/1068:1070 | Single stack bend | homologous IL_7A0S_022 IL_15011.5 | |
| IL_9E1S_036 | 1/I/973:976, 1/I/1061:1062 | No text annotation | geometric IL_8OI5_104 IL_46637.4 | |
| IL_9E1S_037 | 1/I/976:978, 1/I/1057:1061 | No text annotation | ||
| IL_9E1S_038 | 1/I/985:991, 1/I/1044:1050 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8B0X_090 IL_94128.3 | |
| IL_9E1S_039 | 1/I/991:992, 1/I/1042:1044 | Minor groove platform | homologous IL_7A0S_028 IL_98469.1 | |
| IL_9E1S_040 | 1/I/993:998, 1/I/1038:1041 | C-loop | homologous IL_7A0S_029 IL_16301.3 | |
| IL_9E1S_041 | 1/I/1000:1002, 1/I/1034:1036 | Isolated non-canonical cWW pair | homologous IL_7A0S_030 IL_84227.1 | |
| IL_9E1S_043 | 1/I/1077:1078, 1/I/1095:1097 | Single bulged A | geometric IL_8GLP_154 IL_14190.4 | |
| IL_9E1S_044 | 1/I/1123:1125, 1/I/1289:1290 | Single bulged C | homologous IL_8B0X_096 IL_05642.5 | |
| IL_9E1S_045 | 1/I/1127:1131, 1/I/1283:1287 | UAA/GAN | homologous IL_8B0X_097 IL_08938.3 | |
| IL_9E1S_046 | 1/I/1133:1140, 1/I/1280:1281 | No text annotation | homologous IL_8B0X_098 IL_46868.2 | |
| IL_9E1S_047 | 1/I/1140:1142, 1/I/1279:1280 | Single bulged U | homologous IL_8B0X_099 IL_97561.7 | |
| IL_9E1S_048 | 1/I/1147:1153, 1/I/1269:1274 | Kink-turn related | homologous IL_8B0X_100 IL_57188.6 | |
| IL_9E1S_049 | 1/I/1153:1159, 1/I/1253:1269 | No text annotation | homologous IL_8B0X_101 IL_50715.4 | |
| IL_9E1S_050 | 1/I/1160:1163, 1/I/1250:1252 | No text annotation | homologous IL_8B0X_102 IL_76400.2 | |
| IL_9E1S_051 | 1/I/1170:1180, 1/I/1237:1243 | No text annotation | ||
| IL_9E1S_053 | 1/I/1328:1330, 1/I/1378:1381 | No text annotation | homologous IL_8B0X_105 IL_84227.1 | |
| IL_9E1S_054 | 1/I/1339:1346, 1/I/1365:1369 | Kink-turn | homologous IL_8B0X_107 IL_90775.3 | |
| IL_9E1S_055 | 1/I/1393:1400, 1/I/2249:2255 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8B0X_108 IL_62167.5 | |
| IL_9E1S_056 | 1/I/1450:1454, 1/I/1462:1464 | No text annotation | homologous IL_8B0X_110 IL_63596.14 | |
| IL_9E1S_057 | 1/I/1482:1486, 1/I/1507:1511 | No text annotation | homologous IL_8B0X_111 IL_89021.4 | |
| IL_9E1S_058 | 1/I/1488:1492, 1/I/1501:1505 | No text annotation | homologous IL_8B0X_112 IL_05821.3 | |
| IL_9E1S_064 | 1/I/1576:1578, 1/I/1626:1628 | Isolated non-canonical cWW pair | geometric IL_2GUN_002 IL_53541.1 | |
| IL_9E1S_070 | 1/I/1670:1673, 1/I/1794:1798 | tWW and near cWH | geometric IL_6DLR_005 IL_45860.1 | |
| IL_9E1S_071 | 1/I/1675:1678, 1/I/1788:1792 | No text annotation | homologous IL_8B0X_116 IL_74317.1 | |
| IL_9E1S_072 | 1/I/1706:1709, 1/I/1759:1763 | No text annotation | homologous IL_8B0X_118 IL_68574.5 | |
| IL_9E1S_075 | 1/I/1726:1728, 1/I/1736:1737 | Single bulged A | geometric IL_9DFE_061 IL_14190.4 | |
| IL_9E1S_076 | 1/I/1886:1891, 1/I/2242:2244 | No text annotation | homologous IL_8B0X_123 IL_12566.6 | |
| IL_9E1S_077 | 1/I/1898:1900, 1/I/2233:2235 | No text annotation | homologous IL_8B0X_124 IL_10432.3 | |
| IL_9E1S_079 | 1/I/1901:1909, 1/I/2228:2232 | No text annotation | geometric IL_8B0X_180 IL_80252.3 | |
| IL_9E1S_080 | 1/I/1904:1909, 1/I/2228:2231 | No text annotation | homologous IL_8B0X_126 IL_28217.3 | |
| IL_9E1S_081 | 1/I/1921:1926, 1/I/1931:1937 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_20700.3 | |
| IL_9E1S_085 | 1/I/2032:2038, 1/I/2047:2055 | Kink-turn related | homologous IL_8B0X_132 IL_17069.6 | |
| IL_9E1S_088 | 1/I/2080:2083, 1/I/2131:2132 | No text annotation | homologous IL_8B0X_135 IL_73108.4 | |
| IL_9E1S_089 | 1/I/2085:2089, 1/I/2125:2129 | UAA/GAN with extra stack | homologous IL_7A0S_069 IL_89021.4 | |
| IL_9E1S_090 | 1/I/2090:2095, 1/I/2119:2124 | No text annotation | ||
| IL_9E1S_091 | 1/I/2098:2101, 1/I/2112:2116 | No text annotation | homologous IL_8B0X_136 IL_77691.7 | |
| IL_9E1S_094 | 1/I/2172:2183, 1/I/2199:2202 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_9E1S_095 | 1/I/2288:2290, 1/I/2855:2856 | Major groove platform | homologous IL_7A0S_073 IL_48076.10 | |
| IL_9E1S_096 | 1/I/2292:2294, 1/I/2850:2853 | No text annotation | homologous IL_8B0X_140 IL_80025.3 | |
| IL_9E1S_097 | 1/I/2307:2308, 1/I/2676:2679 | Minor groove platform | homologous IL_8B0X_143 IL_98469.1 | |
| IL_9E1S_104 | 1/I/2691:2692, 1/I/2736:2738 | Single stack bend | homologous IL_8B0X_183 IL_15011.5 | |
| IL_9E1S_105 | 1/I/2692:2693, 1/I/2734:2736 | Major groove platform | homologous IL_8B0X_184 IL_48076.10 | |
| IL_9E1S_106 | 1/I/2695:2697, 1/I/2731:2732 | Major groove platform | homologous IL_7A0S_085 IL_48076.10 | |
| IL_9E1S_107 | 1/I/2697:2699, 1/I/2727:2731 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.4 | |
| IL_9E1S_108 | 1/I/2699:2701, 1/I/2725:2727 | Isolated non-canonical cWW pair | geometric IL_3BNN_005 IL_71625.5 | |
| IL_9E1S_109 | 1/I/2704:2708, 1/I/2718:2722 | No text annotation | homologous IL_8B0X_153 IL_87767.4 | |
| IL_9E1S_111 | 1/I/2748:2750, 1/I/2812:2816 | No text annotation | homologous IL_8B0X_155 IL_30722.1 | |
| IL_9E1S_112 | 1/I/2750:2751, 1/I/2809:2812 | No text annotation | homologous IL_8B0X_156 IL_44609.4 | |
| IL_9E1S_113 | 1/I/2760:2761, 1/I/2778:2781 | No text annotation | homologous IL_8B0X_157 IL_94991.3 | |
| IL_9E1S_115 | 1/I/2874:2878, 1/I/3012:3020 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_9E1S_116 | 1/I/2890:2896, 1/I/2901:2906 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8B0X_161 IL_16458.6 | |
| IL_9E1S_117 | 1/I/2918:2922, 1/I/2963:2965 | No text annotation | homologous IL_8B0X_162 IL_63596.14 | |
| IL_9E1S_118 | 1/I/2925:2929, 1/I/2956:2960 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_82016.1 | |
| IL_9E1S_119 | 1/I/2933:2934, 1/I/2949:2952 | No text annotation | homologous IL_8B0X_164 IL_44609.4 | |
| IL_9E1S_120 | 1/I/2975:2980, 1/I/3000:3005 | No text annotation | homologous IL_8B0X_165 IL_91079.1 | |
| IL_9E1S_121 | 1/I/3073:3074, 1/I/3113:3115 | No text annotation | homologous IL_8B0X_168 IL_77710.2 | |
| IL_9E1S_122 | 1/I/3078:3080, 1/I/3106:3109 | Decoding loop related | homologous IL_7A0S_100 IL_05502.2 | |
| IL_9E1S_123 | 1/I/3082:3087, 1/I/3100:3104 | No text annotation | homologous IL_7A0S_101 IL_48489.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9E1S_002 | Major groove intercalation | ||
| IL_9E1S_003 | No text annotation | ||
| IL_9E1S_004 | No text annotation | ||
| IL_9E1S_008 | Single bulged A | ||
| IL_9E1S_009 | Minor groove platform | ||
| IL_9E1S_015 | No text annotation | ||
| IL_9E1S_016 | No text annotation | ||
| IL_9E1S_017 | Minor groove platform | ||
| IL_9E1S_018 | No text annotation | ||
| IL_9E1S_022 | Isolated cWH basepair | ||
| IL_9E1S_024 | No text annotation | ||
| IL_9E1S_028 | Isolated non-canonical cWW pair | ||
| IL_9E1S_031 | Single bulged G | ||
| IL_9E1S_032 | No text annotation | ||
| IL_9E1S_033 | Major groove platform | ||
| IL_9E1S_042 | No text annotation | ||
| IL_9E1S_052 | No text annotation | ||
| IL_9E1S_059 | Isolated non-canonical cWW pair | ||
| IL_9E1S_060 | No text annotation | ||
| IL_9E1S_061 | Major groove intercalation | ||
| IL_9E1S_062 | No text annotation | ||
| IL_9E1S_063 | No text annotation | ||
| IL_9E1S_065 | Triple sheared | ||
| IL_9E1S_066 | No text annotation | ||
| IL_9E1S_067 | Single stack bend | ||
| IL_9E1S_068 | No text annotation | ||
| IL_9E1S_069 | No text annotation | ||
| IL_9E1S_073 | No text annotation | ||
| IL_9E1S_074 | No text annotation | ||
| IL_9E1S_078 | Major groove platform; stack outside cWW | ||
| IL_9E1S_082 | No text annotation | ||
| IL_9E1S_083 | No text annotation | ||
| IL_9E1S_084 | Single bulged A | ||
| IL_9E1S_086 | No text annotation | ||
| IL_9E1S_087 | No text annotation | ||
| IL_9E1S_092 | No text annotation | ||
| IL_9E1S_093 | No text annotation | ||
| IL_9E1S_098 | No text annotation | ||
| IL_9E1S_099 | Isolated non-canonical cWW pair | ||
| IL_9E1S_100 | No text annotation | ||
| IL_9E1S_101 | Single bulged U | ||
| IL_9E1S_102 | Double sheared | ||
| IL_9E1S_103 | Single bulged C | ||
| IL_9E1S_110 | Major groove platform | ||
| IL_9E1S_114 | Single bulged A |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9E1S_001 | 1/B/9:15, 1/B/67:69, 1/B/102:106 | No text annotation | homologous J3_8B0X_026 NA | |
| J3_9E1S_002 | 1/I/30:31, 1/I/563:570, 1/I/597:598 | No text annotation | geometric J3_8B0X_014 J3_68715.3 | |
| J3_9E1S_003 | 1/I/30:31, 1/I/563:573, 1/I/584:598 | No text annotation | homologous J3_8B0X_032 J3_17917.3 | |
| J3_9E1S_004 | 1/I/32:35, 1/I/534:550, 1/I/557:562 | No text annotation | homologous J3_8B0X_033 J3_07616.3 | |
| J3_9E1S_005 | 1/I/56:57, 1/I/70:76, 1/I/110:114 | No text annotation | homologous J3_8B0X_015 J3_01004.3 | |
| J3_9E1S_008 | 1/I/379:383, 1/I/399:408, 1/I/420:424 | No text annotation | homologous J3_8B0X_034 J3_77124.1 | |
| J3_9E1S_009 | 1/I/812:818, 1/I/902:904, 1/I/920:923 | No text annotation | homologous J3_8B0X_016 J3_46658.3 | |
| J3_9E1S_010 | 1/I/827:829, 1/I/861:865, 1/I/889:892 | No text annotation | homologous J3_8B0X_017 J3_69816.3 | |
| J3_9E1S_012 | 1/I/1429:1434, 1/I/1860:1862, 1/I/1874:1877 | No text annotation | homologous J3_8B0X_018 J3_32852.7 | |
| J3_9E1S_013 | 1/I/1437:1440, 1/I/1840:1846, 1/I/1855:1857 | No text annotation | homologous J3_8B0X_019 J3_47341.1 | |
| J3_9E1S_014 | 1/I/1475:1481, 1/I/1512:1516, 1/I/1533:1534 | No text annotation | homologous J3_7A0S_018 J3_94309.3 | |
| J3_9E1S_018 | 1/I/2520:2522, 1/I/2622:2633, 1/I/2659:2665 | No text annotation | homologous J3_8B0X_036 J3_04772.3 | |
| J3_9E1S_019 | 1/I/2533:2537, 1/I/2555:2561, 1/I/2570:2575 | No text annotation | homologous J3_8B0X_037 NA | |
| J3_9E1S_020 | 1/I/2755:2758, 1/I/2783:2785, 1/I/2799:2805 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_9E1S_021 | 1/I/3049:3051, 1/I/3065:3071, 1/I/3117:3121 | No text annotation | ||
| J4_9E1S_001 | 1/I/270:275, 1/I/313:318, 1/I/493:495, 1/I/510:513 | No text annotation | ||
| J4_9E1S_002 | 1/I/379:383, 1/I/399:402, 1/I/406:408, 1/I/420:424 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_9E1S_003 | 1/I/1401:1407, 1/I/1425:1426, 1/I/1880:1883, 1/I/2247:2248 | No text annotation | homologous J4_7A0S_004 J4_19484.1 | |
| J4_9E1S_004 | 1/I/1441:1445, 1/I/1469:1474, 1/I/1535:1536, 1/I/1832:1839 | No text annotation | ||
| J4_9E1S_005 | 1/I/1681:1684, 1/I/1703:1705, 1/I/1764:1768, 1/I/1779:1785 | No text annotation | ||
| J4_9E1S_008 | 1/I/2523:2527, 1/I/2581:2585, 1/I/2608:2610, 1/I/2619:2621 | No text annotation | homologous J4_8B0X_013 J4_98139.1 | |
| J4_9E1S_009 | 1/I/2880:2884, 1/I/2912:2914, 1/I/2969:2973, 1/I/3007:3010 | No text annotation | ||
| J5_9E1S_001 | 1/I/47:54, 1/I/116:121, 1/I/130:131, 1/I/150:152, 1/I/178:180 | No text annotation | homologous J5_8B0X_004 J5_27223.3 | |
| J5_9E1S_002 | 1/I/270:275, 1/I/313:320, 1/I/458:464, 1/I/488:495, 1/I/510:513 | No text annotation | ||
| J5_9E1S_003 | 1/I/619:621, 1/I/662:666, 1/I/679:681, 1/I/1392:1393, 1/I/2255:2256 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_9E1S_004 | 1/I/686:691, 1/I/797:800, 1/I/938:941, 1/I/1327:1328, 1/I/1381:1387 | No text annotation | ||
| J5_9E1S_005 | 1/I/704:708, 1/I/727:733, 1/I/738:742, 1/I/754:760, 1/I/779:785 | No text annotation | ||
| J5_9E1S_006 | 1/I/1909:1917, 1/I/1941:1942, 1/I/1985:1986, 1/I/1990:1998, 1/I/2226:2228 | No text annotation | homologous J5_8B0X_007 J5_99177.3 | |
| J5_9E1S_007 | 1/I/2295:2302, 1/I/2684:2691, 1/I/2738:2744, 1/I/2821:2826, 1/I/2844:2849 | No text annotation | ||
| J5_9E1S_008 | 1/I/2311:2314, 1/I/2481:2484, 1/I/2496:2497, 1/I/2519:2520, 1/I/2665:2673 | No text annotation | homologous J5_8B0X_009 J5_39529.2 | |
| J6_9E1S_001 | 1/I/45:46, 1/I/181:185, 1/I/216:226, 1/I/233:237, 1/I/264:268, 1/I/515:522 | No text annotation | ||
| J6_9E1S_002 | 1/I/2311:2314, 1/I/2481:2484, 1/I/2496:2497, 1/I/2519:2522, 1/I/2622:2633, 1/I/2659:2673 | No text annotation | ||
| J7_9E1S_001 | 1/I/945:951, 1/I/964:965, 1/I/1071:1074, 1/I/1100:1105, 1/I/1116:1120, 1/I/1293:1294, 1/I/1317:1323 | No text annotation | ||
| J8_9E1S_001 | 1/I/7:15, 1/I/613:619, 1/I/2256:2261, 1/I/2278:2281, 1/I/2863:2868, 1/I/3026:3029, 1/I/3041:3046, 1/I/3124:3130 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9E1S_006 | No text annotation | ||
| J3_9E1S_007 | No text annotation | ||
| J3_9E1S_011 | No text annotation | ||
| J3_9E1S_015 | No text annotation | ||
| J3_9E1S_016 | No text annotation | ||
| J3_9E1S_017 | No text annotation | ||
| J4_9E1S_006 | No text annotation | ||
| J4_9E1S_007 | No text annotation |
Coloring options: