HL_9E1S_022
3D structure
- PDB id
- 9E1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- UUUUGAAGAA
- Length
- 10 nucleotides
- Bulged bases
- 9E1S|1|I|A|676
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9E1S_022 not in the Motif Atlas
- Homologous match to HL_8B0X_048
- Geometric discrepancy: 0.1316
- The information below is about HL_8B0X_048
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9E1S|1|I|U|668
9E1S|1|I|U|669
9E1S|1|I|U|670
9E1S|1|I|U|671
9E1S|1|I|G|672
9E1S|1|I|A|673
9E1S|1|I|A|674
9E1S|1|I|G|675
9E1S|1|I|A|676
9E1S|1|I|A|677
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain 7
- 50S ribosomal protein bL37
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- Large ribosomal subunit protein bL21
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