HL_9E1S_031

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

9E1S|1|I|U|1086, 9E1S|1|I|G|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_031 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.3856

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9E1S|1|I|G|1083
9E1S|1|I|G|1084
9E1S|1|I|A|1085
9E1S|1|I|U|1086
9E1S|1|I|A|1087
9E1S|1|I|A|1088
9E1S|1|I|G|1089
9E1S|1|I|C|1090

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein bL37

Chain M

50S ribosomal protein L16