HL_9E1S_040

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

9E1S|1|I|U|1527, 9E1S|1|I|U|1528

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_040 not in the Motif Atlas

Homologous match to HL_8B0X_063

Geometric discrepancy: 0.1033

The information below is about HL_8B0X_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9E1S|1|I|G|1520
9E1S|1|I|U|1521
9E1S|1|I|U|1522
9E1S|1|I|G|1523
9E1S|1|I|A|1524
9E1S|1|I|U|1525
9E1S|1|I|A|1526
9E1S|1|I|U|1527
9E1S|1|I|U|1528
9E1S|1|I|C|1529

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23