HL_9E1S_042

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

UCAGUGGUAACA

Length

12 nucleotides

Bulged bases

9E1S|1|I|A|1690, 9E1S|1|I|G|1691, 9E1S|1|I|U|1692, 9E1S|1|I|C|1698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_042 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5497

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9E1S|1|I|U|1688
9E1S|1|I|C|1689
9E1S|1|I|A|1690
9E1S|1|I|G|1691
9E1S|1|I|U|1692
9E1S|1|I|G|1693
9E1S|1|I|G|1694
9E1S|1|I|U|1695
9E1S|1|I|A|1696
9E1S|1|I|A|1697
9E1S|1|I|C|1698
9E1S|1|I|A|1699

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17