HL_9E1S_051

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

9E1S|1|I|A|2014, 9E1S|1|I|C|2015, 9E1S|1|I|U|2016, 9E1S|1|I|A|2020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_051 not in the Motif Atlas

Homologous match to HL_8B0X_073

Geometric discrepancy: 0.0463

The information below is about HL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.3

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

9E1S|1|I|U|2011
9E1S|1|I|U|2012
9E1S|1|I|U|2013
9E1S|1|I|A|2014
9E1S|1|I|C|2015
9E1S|1|I|U|2016
9E1S|1|I|A|2017
9E1S|1|I|A|2018
9E1S|1|I|A|2019
9E1S|1|I|A|2020
9E1S|1|I|A|2021

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 1

Ribosomal tunnel occlusion factor-RTOF

Chain 2

50S ribosomal protein bL34

Chain C

50S ribosomal protein L2