HL_9E1S_056

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

9E1S|1|I|A|2268, 9E1S|1|I|A|2269, 9E1S|1|I|G|2270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_056 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.1335

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

9E1S|1|I|G|2265
9E1S|1|I|U|2266
9E1S|1|I|A|2267
9E1S|1|I|A|2268
9E1S|1|I|A|2269
9E1S|1|I|G|2270
9E1S|1|I|A|2271
9E1S|1|I|U|2272
9E1S|1|I|G|2273
9E1S|1|I|C|2274

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 7

50S ribosomal protein bL37

Chain D

50S ribosomal protein L3