HL_9E1S_058

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CUGAAUCG

Length

8 nucleotides

Bulged bases

9E1S|1|I|G|2448, 9E1S|1|I|A|2449, 9E1S|1|I|U|2451

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_058 not in the Motif Atlas

Geometric match to HL_4V9F_005

Geometric discrepancy: 0.3764

The information below is about HL_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

9E1S|1|I|C|2446
9E1S|1|I|U|2447
9E1S|1|I|G|2448
9E1S|1|I|A|2449
9E1S|1|I|A|2450
9E1S|1|I|U|2451
9E1S|1|I|C|2452
9E1S|1|I|G|2453

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain y

50S ribosomal protein bL28-c minus