HL_9E1S_071

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E1S_071 not in the Motif Atlas

Homologous match to HL_8B0X_092

Geometric discrepancy: 0.0715

The information below is about HL_8B0X_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9E1S|1|I|C|2939
9E1S|1|I|G|2940
9E1S|1|I|C|2941
9E1S|1|I|C|2942
9E1S|1|I|A|2943
9E1S|1|I|G|2944

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17