HL_9E6Q_002

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

(B8T)GCAGGCAG

Length

9 nucleotides

Bulged bases

9E6Q|1|1|G|83

QA status

Modified nucleotides: B8T

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

9E6Q|1|1|B8T|79
9E6Q|1|1|G|80
9E6Q|1|1|C|81
9E6Q|1|1|A|82
9E6Q|1|1|G|83
9E6Q|1|1|G|84
9E6Q|1|1|C|85
9E6Q|1|1|A|86
9E6Q|1|1|G|87

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AV

Large ribosomal subunit protein uL24

Chain AX

Large ribosomal subunit protein uL29

Chain Af

Large ribosomal subunit protein eL39