Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9E6Q_0011/1/51:60Pseudoknot with intercalation
HL_17803.1
HL_9E6Q_0021/1/79:87Pseudoknot geometry
HL_52651.2
HL_9E6Q_0031/1/114:119No text annotation
HL_75660.7
HL_9E6Q_0041/1/130:136GNRA
HL_34789.2
HL_9E6Q_0051/1/149:154GNRA
HL_34789.2
HL_9E6Q_0061/1/175:182No text annotation
HL_48677.1
HL_9E6Q_0071/1/206:211No text annotation
HL_19413.2
HL_9E6Q_0081/1/227:233No text annotation
HL_76371.2
HL_9E6Q_0091/1/267:273GNRA
HL_34789.2
HL_9E6Q_0101/1/333:340T-loop with 2 stacked bulged bases
HL_13999.2
HL_9E6Q_0111/1/347:351No text annotation
HL_75660.7
HL_9E6Q_0121/1/355:363T-loop with unstacked turn
HL_27670.3
HL_9E6Q_0131/1/415:424No text annotation
HL_91228.1
HL_9E6Q_0141/1/441:449Pseudoknot geometry
HL_52651.2
HL_9E6Q_0151/1/493:498GNRA
HL_34789.2
HL_9E6Q_0161/1/518:523GNRA
HL_34789.2
HL_9E6Q_0171/1/601:606GNRA
HL_34789.2
HL_9E6Q_0181/1/647:656T-loop with 2 stacked bulged bases
HL_33597.2
HL_9E6Q_0191/1/694:700No text annotation
HL_42293.1
HL_9E6Q_0201/1/714:719GNRA
HL_34789.2
HL_9E6Q_0211/1/736:741GNRA
HL_34789.2
HL_9E6Q_0221/1/759:764GNRA
HL_34789.2
HL_9E6Q_0231/1/830:835GNRA
HL_37569.2
HL_9E6Q_0241/1/862:871No text annotation
HL_50204.1
HL_9E6Q_0251/1/896:904No text annotation
HL_92598.1
HL_9E6Q_0261/1/944:949No text annotation
HL_27530.1
HL_9E6Q_0271/1/1077:1083GNRA
HL_34789.2
HL_9E6Q_0281/1/1099:1106No text annotation
HL_47171.1
HL_9E6Q_0291/1/1299:1303No text annotation
HL_32346.6
HL_9E6Q_0301/1/1349:1354GNRA
HL_34789.2
HL_9E6Q_0311/1/1409:1417T-loop with 2 stacked bulged bases
HL_33597.2
HL_9E6Q_0321/1/1453:1459Pseudoknot geometry with 3' bulge
HL_49081.1
HL_9E6Q_0331/1/1491:1497GNRA
HL_34789.2
HL_9E6Q_0341/1/1520:1529No text annotation
HL_77449.1
HL_9E6Q_0351/1/1554:1559GNRA
HL_34789.2
HL_9E6Q_0361/1/1600:1607No text annotation
HL_22758.1
HL_9E6Q_0371/1/1638:1644Other HL
HL_67772.1
HL_9E6Q_0711/1/1678:1681No text annotation
HL_97696.1
HL_9E6Q_0391/1/1707:1711Mini UNCG
HL_90436.2
HL_9E6Q_0401/1/1754:1761No text annotation
HL_28592.1
HL_9E6Q_0411/1/1773:1779GNRA
HL_34789.2
HL_9E6Q_0421/1/1835:1840UNCG
HL_61337.2
HL_9E6Q_0431/1/1866:1872Fab BL3-6 binding hairpin with tSW
HL_64036.2
HL_9E6Q_0441/1/1888:1892No text annotation
HL_80709.5
HL_9E6Q_0451/1/1913:1923No text annotation
HL_87681.1
HL_9E6Q_0461/1/1942:1947GNRA
HL_34789.2
HL_9E6Q_0471/1/1996:2003GNRA related
HL_92598.1
HL_9E6Q_0481/1/2070:2078No text annotation
HL_61418.2
HL_9E6Q_0491/1/2147:2156No text annotation
HL_78372.1
HL_9E6Q_0501/1/2324:2329GNRA
HL_34789.2
HL_9E6Q_0511/1/2359:2367No text annotation
HL_11974.2
HL_9E6Q_0521/1/2376:2388No text annotation
HL_02042.1
HL_9E6Q_0721/1/2416:2424No text annotation
HL_02452.1
HL_9E6Q_0541/1/2436:2443Pseudoknot geometry
HL_52651.2
HL_9E6Q_0551/1/2467:2477No text annotation
HL_02042.1
HL_9E6Q_0561/1/2489:2494GNRA
HL_34789.2
HL_9E6Q_0571/1/2521:2529Pseudoknot geometry
HL_52651.2
HL_9E6Q_0581/1/2585:2593No text annotation
HL_52011.1
HL_9E6Q_0591/1/2642:2649GNRA variation
HL_46665.2
HL_9E6Q_0601/1/2665:2671No text annotation
HL_48677.1
HL_9E6Q_0611/1/2708:2713GNRA
HL_34789.2
HL_9E6Q_0621/1/2773:2778GNRA
HL_34789.2
HL_9E6Q_0631/1/2815:2820Ribsomal LSU H95
HL_12125.2
HL_9E6Q_0641/1/2857:2871No text annotation
HL_53269.2
HL_9E6Q_0661/1/2938:2946No text annotation
HL_37889.1
HL_9E6Q_0671/1/2979:2985No text annotation
HL_75660.7
HL_9E6Q_0681/2/38:51No text annotation
HL_97756.3
HL_9E6Q_0691/2/42:47No text annotation
HL_59381.2
HL_9E6Q_0701/2/93:98GNRA
HL_34789.2

Problematic loops

#loop idProblemSequence
HL_9E6Q_038No text annotation
HL_9E6Q_053No text annotation
HL_9E6Q_065No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9E6Q_0011/1/17:23,
1/1/539:545
Triple sheared with non-canonical cWW
IL_22311.1
IL_9E6Q_0021/1/29:30,
1/1/473:475
Single bulged A
IL_97561.2
IL_9E6Q_0031/1/35:36,
1/1/466:468
Minor groove platform
IL_34520.2
IL_9E6Q_0041/1/73:77,
1/1/89:96
Kink-turn
IL_71972.1
IL_9E6Q_0051/1/164:165,
1/1/193:195
Single stack bend
IL_15011.2
IL_9E6Q_0061/1/169:174,
1/1/183:189
No text annotation
IL_02666.1
IL_9E6Q_0071/1/220:226,
1/1/234:239
7x6 Sarcin-Ricin; G-bulge
IL_02666.1
IL_9E6Q_0081/1/255:258,
1/1/286:287
Major groove platform; stack outside cWW
IL_74641.2
IL_9E6Q_0091/1/255:259,
1/1/281:287
Kink-turn with embedded cWW pair
IL_65996.1
IL_9E6Q_0101/1/258:259,
1/1/281:286
No text annotation
IL_10396.1
IL_9E6Q_0111/1/296:297,
1/1/397:400
No text annotation
IL_94991.2
IL_9E6Q_0121/1/302:305,
1/1/391:392
No text annotation
IL_79144.1
IL_9E6Q_0131/1/302:306,
1/1/388:392
No text annotation
IL_01742.1
IL_9E6Q_0141/1/305:306,
1/1/388:391
Multiple bulged bases
IL_36175.2
IL_9E6Q_0151/1/310:312,
1/1/383:384
Major groove platform
IL_48076.8
IL_9E6Q_0161/1/320:322,
1/1/371:375
No text annotation
IL_76658.1
IL_9E6Q_0171/1/328:330,
1/1/343:344
Single bulged U
IL_97561.2
IL_9E6Q_0181/1/512:515,
1/1/526:538
No text annotation
IL_44923.1
IL_9E6Q_0191/1/570:575,
1/1/630:632
No text annotation
IL_93336.1
IL_9E6Q_0201/1/576:579,
1/1/628:629
No text annotation
IL_18188.1
IL_9E6Q_0211/1/588:592,
1/1/616:619
UAA/GAN variation
IL_45790.1
IL_9E6Q_0221/1/592:597,
1/1/610:616
Sarcin-Ricin target in LSU H95; G-bulge
IL_02666.1
IL_9E6Q_0231/1/687:691,
1/1/703:707
AAA cross-strand stack
IL_66798.3
IL_9E6Q_0241/1/723:725,
1/1/752:753
Major groove intercalation
IL_14190.2
IL_9E6Q_0251/1/728:732,
1/1/745:749
tSH-tHW-tHS
IL_05821.1
IL_9E6Q_0261/1/791:795,
1/1/917:924
tHW-tHW cross-strand stack
IL_73855.1
IL_9E6Q_0271/1/814:815,
1/1/881:883
Single bulged A
IL_14190.2
IL_9E6Q_0281/1/819:820,
1/1/845:847
Single bulged G
IL_28408.2
IL_9E6Q_0291/1/820:824,
1/1/841:845
Triple sheared
IL_15190.2
IL_9E6Q_0301/1/855:859,
1/1/873:876
No text annotation
IL_34942.1
IL_9E6Q_0311/1/859:861,
1/1/872:873
Single bulged U
IL_97561.2
IL_9E6Q_0321/1/893:895,
1/1/905:909
Multiple bulged bases
IL_89509.1
IL_9E6Q_0331/1/955:956,
1/1/1061:1063
No text annotation
IL_15011.2
IL_9E6Q_0341/1/961:965,
1/1/1049:1056
Kink-turn
IL_90775.2
IL_9E6Q_0351/1/967:969,
1/1/1046:1047
Single bulged A
IL_28408.2
IL_9E6Q_0361/1/970:972,
1/1/1043:1045
Isolated non-canonical cWW pair
IL_01003.2
IL_9E6Q_0371/1/977:981,
1/1/1034:1038
5x5 Sarcin-Ricin with intercalated A; G-bulge
IL_38862.5
IL_9E6Q_0381/1/981:982,
1/1/1032:1034
Minor groove platform
IL_05642.2
IL_9E6Q_0391/1/983:987,
1/1/1028:1031
C-loop
IL_16301.1
IL_9E6Q_0411/1/1073:1075,
1/1/1085:1086
No text annotation
IL_97561.2
IL_9E6Q_0421/1/1118:1122,
1/1/1279:1283
UAA/GAN
IL_08938.1
IL_9E6Q_0431/1/1124:1131,
1/1/1276:1277
SSU/LSU pseudoknot
IL_11411.1
IL_9E6Q_0441/1/1131:1133,
1/1/1275:1276
Single bulged U
IL_97561.2
IL_9E6Q_0451/1/1138:1144,
1/1/1266:1270
Kink-turn related
IL_57188.6
IL_9E6Q_0461/1/1145:1156,
1/1/1250:1265
No text annotation
IL_39721.1
IL_9E6Q_0471/1/1158:1160,
1/1/1247:1248
Single bulged G
IL_05642.2
IL_9E6Q_0481/1/1291:1292,
1/1/1310:1312
Single bulged U
IL_97561.2
IL_9E6Q_0491/1/1324:1326,
1/1/1374:1377
Isolated cWS basepair
IL_42997.5
IL_9E6Q_0501/1/1335:1342,
1/1/1361:1365
Kink-turn
IL_90775.2
IL_9E6Q_0511/1/1390:1396,
1/1/2132:2137
7x6 Sarcin-Ricin; G-bulge
IL_02666.1
IL_9E6Q_0521/1/1439:1442,
1/1/1745:1746
Major groove platform; stack outside cWW
IL_74641.2
IL_9E6Q_0531/1/1448:1452,
1/1/1460:1462
C-loop
IL_63596.12
IL_9E6Q_0541/1/1479:1483,
1/1/1506:1511
UAA/GAN
IL_08938.1
IL_9E6Q_0551/1/1488:1489,
1/1/1499:1501
Minor groove platform related
IL_34520.2
IL_9E6Q_0561/1/1543:1546,
1/1/1728:1732
No text annotation
IL_74317.1
IL_9E6Q_0571/1/1586:1589,
1/1/1694:1698
No text annotation
IL_74317.1
IL_9E6Q_0581/1/1613:1617,
1/1/1665:1670
tSH-tHH-tHS
IL_25943.1
IL_9E6Q_0591/1/1621:1625,
1/1/1657:1661
No text annotation
IL_89021.3
IL_9E6Q_0601/1/1630:1636,
1/1/1646:1652
Kink-turn
IL_93476.1
IL_9E6Q_0611/1/1796:1800,
1/1/2125:2126
No text annotation
IL_06671.1
IL_9E6Q_0621/1/1807:1809,
1/1/2116:2118
Isolated tWW turn
IL_10432.1
IL_9E6Q_0631/1/1810:1813,
1/1/2114:2115
Major groove platform; stack outside cWW
IL_74641.2
IL_9E6Q_0641/1/1810:1818,
1/1/2111:2115
No text annotation
IL_80252.1
IL_9E6Q_0651/1/1813:1818,
1/1/2111:2114
Intercalated tWH
IL_28217.1
IL_9E6Q_0661/1/1830:1835,
1/1/1840:1846
tSH-tSH-tHH-tHS
IL_20700.1
IL_9E6Q_0671/1/1906:1907,
1/1/2101:2103
Single bulged A
IL_14190.2
IL_9E6Q_0681/1/1934:1939,
1/1/1950:1957
No text annotation
IL_9E6Q_0691/1/1973:1976,
1/1/2023:2024
Minor groove platform, major groove intercalation
IL_55206.1
IL_9E6Q_0701/1/1977:1978,
1/1/2019:2022
Major groove intercalation
IL_71421.2
IL_9E6Q_0711/1/1982:1985,
1/1/2014:2015
Minor groove platform
IL_87975.1
IL_9E6Q_0721/1/1987:1992,
1/1/2007:2012
No text annotation
IL_74322.2
IL_9E6Q_0731/1/2054:2055,
1/1/2085:2088
Bulged stacked bases
IL_24886.2
IL_9E6Q_0741/1/2055:2066,
1/1/2082:2085
No text annotation
IL_84014.1
IL_9E6Q_0751/1/2170:2172,
1/1/2731:2732
Major groove platform
IL_48076.8
IL_9E6Q_0761/1/2174:2176,
1/1/2726:2729
No text annotation
IL_80025.1
IL_9E6Q_0771/1/2187:2189,
1/1/2556:2557
Single bulged U
IL_97561.2
IL_9E6Q_0781/1/2190:2191,
1/1/2552:2555
Minor groove platform
IL_34520.2
IL_9E6Q_0791/1/2201:2203,
1/1/2347:2350
Isolated tHS basepair with bulges
IL_87316.1
IL_9E6Q_0801/1/2357:2358,
1/1/2368:2370
Single bulged A
IL_14190.2
IL_9E6Q_0811/1/2409:2411,
1/1/2429:2433
Isolated tHS basepair with bulges
IL_14250.1
IL_9E6Q_0821/1/2514:2516,
1/1/2533:2534
Single stack bend
IL_15011.2
IL_9E6Q_0831/1/2516:2518,
1/1/2532:2533
Single bulged C
IL_05642.2
IL_9E6Q_0841/1/2568:2569,
1/1/2610:2612
Major groove platform
IL_48076.8
IL_9E6Q_0851/1/2571:2573,
1/1/2607:2608
Major groove platform
IL_46637.2
IL_9E6Q_0861/1/2573:2575,
1/1/2603:2607
Major groove minor groove platform with extra cWW
IL_36931.2
IL_9E6Q_0871/1/2580:2584,
1/1/2594:2598
Double sheared with non-canonical cWW
IL_87767.2
IL_9E6Q_0881/1/2621:2622,
1/1/2694:2696
Major groove platform
IL_46637.2
IL_9E6Q_0891/1/2624:2626,
1/1/2688:2692
Isolated non-canonical cWW with bulges
IL_68118.2
IL_9E6Q_0901/1/2626:2627,
1/1/2685:2688
Multiple bulged bases
IL_44609.2
IL_9E6Q_0911/1/2636:2637,
1/1/2654:2657
Major groove platform with intercalation
IL_94991.2
IL_9E6Q_0921/1/2705:2706,
1/1/2715:2717
Single bulged A
IL_14190.2
IL_9E6Q_0931/1/2750:2754,
1/1/2886:2894
No text annotation
IL_04638.4
IL_9E6Q_0941/1/2767:2773,
1/1/2778:2783
Sarcin-Ricin target in LSU H95; G-bulge
IL_02666.1
IL_9E6Q_0951/1/2795:2799,
1/1/2838:2840
C-loop
IL_63596.12
IL_9E6Q_0961/1/2799:2801,
1/1/2836:2838
Isolated non-canonical cWW pair
IL_01003.2
IL_9E6Q_0971/1/2802:2806,
1/1/2831:2835
UAA/GAN variation
IL_45790.1
IL_9E6Q_0981/1/2810:2811,
1/1/2824:2827
Multiple bulged bases
IL_44609.2
IL_9E6Q_0991/1/2849:2854,
1/1/2874:2879
UAA/GAN with extra cWW
IL_91079.1
IL_9E6Q_1001/1/2927:2930,
1/1/3016:3019
Double sheared
IL_58355.2
IL_9E6Q_1011/1/2957:2958,
1/1/3005:3007
Major groove intercalation
IL_77710.1
IL_9E6Q_1021/1/2962:2963,
1/1/2999:3001
Single bulged A
IL_28408.2
IL_9E6Q_1031/1/2966:2972,
1/1/2992:2996
No text annotation
IL_9E6Q_1041/1/2975:2978,
1/1/2986:2989
Double sheared
IL_58355.2
IL_9E6Q_1051/2/6:9,
1/2/122:124
No text annotation
IL_05502.1
IL_9E6Q_1061/2/27:33,
1/2/58:63
No text annotation
IL_41504.1
IL_9E6Q_1071/2/34:35,
1/2/54:57
Major groove minor groove platform; mini C-loop
IL_73108.2
IL_9E6Q_1081/2/38:42,
1/2/47:51
Symmetric double minor groove platform
IL_58103.12
IL_9E6Q_1091/2/75:77,
1/2/112:113
Single bulged U
IL_97561.2
IL_9E6Q_1101/2/79:85,
1/2/105:110
7x6 Sarcin-Ricin; G-bulge
IL_02666.1
IL_9E6Q_1111/2/90:92,
1/2/99:100
Single bulged U
IL_97561.2

Problematic loops

#loop idProblemSequence
IL_9E6Q_040Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9E6Q_0011/1/23:24,
1/1/505:512,
1/1/538:539
No text annotation
J3_68715.1
J3_9E6Q_0021/1/23:24,
1/1/505:515,
1/1/526:539
No text annotation
J3_17917.1
J3_9E6Q_0031/1/25:28,
1/1/476:492,
1/1/499:504
No text annotation
J3_07616.1
J3_9E6Q_0041/1/48:49,
1/1/62:68,
1/1/101:105
No text annotation
J3_01004.1
J3_9E6Q_0051/1/250:254,
1/1/288:294,
1/1/402:404
No text annotation
J3_96248.1
J3_9E6Q_0061/1/324:328,
1/1/344:353,
1/1/365:369
No text annotation
J3_77124.1
J3_9E6Q_0071/1/800:806,
1/1/891:893,
1/1/909:912
No text annotation
J3_46658.1
J3_9E6Q_0081/1/815:817,
1/1/849:853,
1/1/878:881
No text annotation
J3_69816.1
J3_9E6Q_0091/1/1426:1432,
1/1/1768:1770,
1/1/1782:1785
No text annotation
J3_47341.1
J3_9E6Q_0101/1/1434:1438,
1/1/1747:1753,
1/1/1762:1766
No text annotation
J3_9E6Q_0111/1/1473:1478,
1/1/1512:1516,
1/1/1533:1534
No text annotation
J3_94309.1
J3_9E6Q_0121/1/1546:1552,
1/1/1561:1565,
1/1/1725:1728
No text annotation
J3_9E6Q_0131/1/1574:1578,
1/1/1706:1707,
1/1/1711:1716
No text annotation
J3_08594.1
J3_9E6Q_0141/1/2211:2213,
1/1/2315:2319,
1/1/2334:2339
No text annotation
J3_17460.1
J3_9E6Q_0151/1/2394:2396,
1/1/2499:2510,
1/1/2538:2543
No text annotation
J3_04772.1
J3_9E6Q_0161/1/2407:2409,
1/1/2433:2435,
1/1/2444:2449
No text annotation
J3_05327.1
J3_9E6Q_0171/1/2631:2634,
1/1/2659:2662,
1/1/2674:2681
No text annotation
J3_68010.1
J3_9E6Q_0181/1/2933:2935,
1/1/2949:2955,
1/1/3009:3013
No text annotation
J3_9E6Q_0191/2/14:19,
1/2/71:72,
1/2/116:117
No text annotation
J3_26985.1
J4_9E6Q_0011/1/249:250,
1/1/404:409,
1/1/430:437,
1/1/453:456
No text annotation
J4_94698.1
J4_9E6Q_0021/1/324:328,
1/1/344:347,
1/1/351:353,
1/1/365:369
No text annotation
J4_16174.1
J4_9E6Q_0031/1/1397:1404,
1/1/1422:1423,
1/1/1788:1792,
1/1/2130:2131
No text annotation
J4_75426.1
J4_9E6Q_0041/1/1439:1443,
1/1/1467:1472,
1/1/1535:1536,
1/1/1739:1746
No text annotation
J4_77353.1
J4_9E6Q_0051/1/1442:1443,
1/1/1467:1472,
1/1/1535:1536,
1/1/1739:1745
No text annotation
J4_48150.1
J4_9E6Q_0061/1/1594:1595,
1/1/1612:1613,
1/1/1670:1671,
1/1/1688:1689
No text annotation
J4_75575.1
J4_9E6Q_0071/1/1908:1912,
1/1/1924:1928,
1/1/1963:1967,
1/1/2095:2100
No text annotation
J4_78485.1
J4_9E6Q_0081/1/1969:1971,
1/1/2026:2027,
1/1/2045:2054,
1/1/2088:2093
No text annotation
J4_42306.1
J4_9E6Q_0091/1/2397:2401,
1/1/2455:2459,
1/1/2485:2487,
1/1/2496:2498
No text annotation
J4_98139.1
J4_9E6Q_0101/1/2757:2760,
1/1/2790:2791,
1/1/2844:2846,
1/1/2882:2883
No text annotation
J5_9E6Q_0011/1/39:46,
1/1/107:112,
1/1/121:122,
1/1/144:145,
1/1/158:159
No text annotation
J5_75459.1
J5_9E6Q_0021/1/665:670,
1/1/785:788,
1/1/927:930,
1/1/1323:1324,
1/1/1377:1383
No text annotation
J5_15067.1
J5_9E6Q_0031/1/682:685,
1/1/709:713,
1/1/720:723,
1/1/753:754,
1/1/769:773
No text annotation
J5_43592.1
J5_9E6Q_0041/1/682:685,
1/1/709:713,
1/1/720:725,
1/1/752:754,
1/1/769:773
No text annotation
J5_63867.1
J5_9E6Q_0051/1/1818:1826,
1/1/1850:1851,
1/1/1887:1888,
1/1/1892:1900,
1/1/2109:2111
No text annotation
J5_99177.1
J5_9E6Q_0061/1/2177:2184,
1/1/2560:2568,
1/1/2612:2621,
1/1/2696:2702,
1/1/2720:2725
No text annotation
J5_53110.1
J5_9E6Q_0071/1/2194:2197,
1/1/2354:2357,
1/1/2370:2371,
1/1/2393:2394,
1/1/2543:2549
No text annotation
J5_96125.1
J6_9E6Q_0011/1/37:38,
1/1/160:164,
1/1/195:205,
1/1/212:216,
1/1/243:247,
1/1/458:465
No text annotation
J6_56891.1
J6_9E6Q_0021/1/2194:2197,
1/1/2354:2357,
1/1/2370:2371,
1/1/2393:2396,
1/1/2499:2510,
1/1/2538:2549
No text annotation
J6_84807.1
J7_9E6Q_0011/1/935:940,
1/1/953:955,
1/1/1063:1067,
1/1/1092:1097,
1/1/1108:1112,
1/1/1289:1290,
1/1/1313:1318
No text annotation
J11_9E6Q_0011/1/3:9,
1/1/553:560,
1/1/642:645,
1/1/658:660,
1/1/1388:1389,
1/1/2138:2143,
1/1/2160:2163,
1/1/2739:2744,
1/1/2900:2903,
1/1/2926:2927,
1/1/3019:3020
No text annotation

Problematic loops

No problematic loops


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