HL_9E6Q_024

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

AUGUGCAAAU

Length

10 nucleotides

Bulged bases

9E6Q|1|1|U|865, 9E6Q|1|1|A|869, 9E6Q|1|1|A|870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

9E6Q|1|1|A|862
9E6Q|1|1|U|863
9E6Q|1|1|G|864
9E6Q|1|1|U|865
9E6Q|1|1|G|866
9E6Q|1|1|C|867
9E6Q|1|1|A|868
9E6Q|1|1|A|869
9E6Q|1|1|A|870
9E6Q|1|1|U|871

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AT

Large ribosomal subunit protein uL22

Chain Ad

Large ribosomal subunit protein eL37