HL_9E6Q_024
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- AUGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 9E6Q|1|1|U|865, 9E6Q|1|1|A|869, 9E6Q|1|1|A|870
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9E6Q_024 not in the Motif Atlas
- Homologous match to HL_4V9F_024
- Geometric discrepancy: 0.1141
- The information below is about HL_4V9F_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
9E6Q|1|1|A|862
9E6Q|1|1|U|863
9E6Q|1|1|G|864
9E6Q|1|1|U|865
9E6Q|1|1|G|866
9E6Q|1|1|C|867
9E6Q|1|1|A|868
9E6Q|1|1|A|869
9E6Q|1|1|A|870
9E6Q|1|1|U|871
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AB
- Large ribosomal subunit protein uL3
- Chain AT
- Large ribosomal subunit protein uL22
- Chain Ad
- Large ribosomal subunit protein eL37
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