3D structure

PDB id
9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
AUGUGCAAAU
Length
10 nucleotides
Bulged bases
9E6Q|1|1|U|865, 9E6Q|1|1|A|869, 9E6Q|1|1|A|870
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9E6Q_024 not in the Motif Atlas
Homologous match to HL_4V9F_024
Geometric discrepancy: 0.1141
The information below is about HL_4V9F_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

9E6Q|1|1|A|862
9E6Q|1|1|U|863
9E6Q|1|1|G|864
9E6Q|1|1|U|865
9E6Q|1|1|G|866
9E6Q|1|1|C|867
9E6Q|1|1|A|868
9E6Q|1|1|A|869
9E6Q|1|1|A|870
9E6Q|1|1|U|871

Current chains

Chain 1
23S rRNA

Nearby chains

Chain AB
Large ribosomal subunit protein uL3
Chain AT
Large ribosomal subunit protein uL22
Chain Ad
Large ribosomal subunit protein eL37

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