HL_9E6Q_031

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GUGAGAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

9E6Q|1|1|G|1409
9E6Q|1|1|U|1410
9E6Q|1|1|G|1411
9E6Q|1|1|A|1412
9E6Q|1|1|G|1413
9E6Q|1|1|A|1414
9E6Q|1|1|A|1415
9E6Q|1|1|G|1416
9E6Q|1|1|C|1417

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AQ

Large ribosomal subunit protein eL19

Chain AT

Large ribosomal subunit protein uL22

Chain Aa

Large ribosomal subunit protein eL31