HL_9E6Q_034

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9E6Q|1|1|U|1527, 9E6Q|1|1|U|1528

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9E6Q|1|1|G|1520
9E6Q|1|1|U|1521
9E6Q|1|1|U|1522
9E6Q|1|1|A|1523
9E6Q|1|1|A|1524
9E6Q|1|1|U|1525
9E6Q|1|1|A|1526
9E6Q|1|1|U|1527
9E6Q|1|1|U|1528
9E6Q|1|1|C|1529

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AQ

Large ribosomal subunit protein eL19

Chain AU

Large ribosomal subunit protein uL23

Chain Ac

Large ribosomal subunit protein eL34

Chain Af

Large ribosomal subunit protein eL39