HL_9E6Q_038

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GGUUUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_038 not in the Motif Atlas

Geometric match to HL_8C3A_195

Geometric discrepancy: 0.2805

The information below is about HL_8C3A_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.3

Basepair signature

cWW-F-F-tSW

Number of instances in this motif group

8

Unit IDs

9E6Q|1|1|G|1677
9E6Q|1|1|G|1678
9E6Q|1|1|U|1679
9E6Q|1|1|U|1680
9E6Q|1|1|U|1681
9E6Q|1|1|C|1682

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AQ

Large ribosomal subunit protein eL19

Chain AU

Large ribosomal subunit protein uL23