HL_9E6Q_043

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GUAUACC

Length

7 nucleotides

Bulged bases

9E6Q|1|1|U|1867, 9E6Q|1|1|U|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_043 not in the Motif Atlas

Geometric match to HL_6X5M_002

Geometric discrepancy: 0.1642

The information below is about HL_6X5M_002

Detailed Annotation

Fab BL3-6 binding hairpin with tSW

Broad Annotation

No text annotation

Motif group

HL_22584.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

26

Unit IDs

9E6Q|1|1|G|1866
9E6Q|1|1|U|1867
9E6Q|1|1|A|1868
9E6Q|1|1|U|1869
9E6Q|1|1|A|1870
9E6Q|1|1|C|1871
9E6Q|1|1|C|1872

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AQ

Large ribosomal subunit protein eL19

Chain Ak

PaREP1 domain containing protein