HL_9E6Q_045

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UUUAACAAAAA

Length

11 nucleotides

Bulged bases

9E6Q|1|1|A|1916, 9E6Q|1|1|A|1917, 9E6Q|1|1|C|1918, 9E6Q|1|1|A|1922

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9E6Q|1|1|U|1913
9E6Q|1|1|U|1914
9E6Q|1|1|U|1915
9E6Q|1|1|A|1916
9E6Q|1|1|A|1917
9E6Q|1|1|C|1918
9E6Q|1|1|A|1919
9E6Q|1|1|A|1920
9E6Q|1|1|A|1921
9E6Q|1|1|A|1922
9E6Q|1|1|A|1923

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Putative signal-transduction protein with CBS domains

Chain AA

Large ribosomal subunit protein uL2

Chain AT

Large ribosomal subunit protein uL22

Chain Ad

Large ribosomal subunit protein eL37