HL_9E6Q_047

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GGUACAAC

Length

8 nucleotides

Bulged bases

9E6Q|1|1|A|1999

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_047 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.1521

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9E6Q|1|1|G|1996
9E6Q|1|1|G|1997
9E6Q|1|1|U|1998
9E6Q|1|1|A|1999
9E6Q|1|1|C|2000
9E6Q|1|1|A|2001
9E6Q|1|1|A|2002
9E6Q|1|1|C|2003

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Ah

eL42