HL_9E6Q_051

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUG(OMG)GGC(OMG)G

Length

9 nucleotides

Bulged bases

9E6Q|1|1|G|2361

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_051 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.1514

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9E6Q|1|1|C|2359
9E6Q|1|1|U|2360
9E6Q|1|1|G|2361
9E6Q|1|1|OMG|2362
9E6Q|1|1|G|2363
9E6Q|1|1|G|2364
9E6Q|1|1|C|2365
9E6Q|1|1|OMG|2366
9E6Q|1|1|G|2367

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Putative signal-transduction protein with CBS domains

Chain AN

Large ribosomal subunit protein uL16