HL_9E6Q_052

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGAAAAGAUAUC(OMG)

Length

13 nucleotides

Bulged bases

9E6Q|1|1|A|2380, 9E6Q|1|1|C|2387

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9E6Q|1|1|U|2376
9E6Q|1|1|G|2377
9E6Q|1|1|A|2378
9E6Q|1|1|A|2379
9E6Q|1|1|A|2380
9E6Q|1|1|A|2381
9E6Q|1|1|G|2382
9E6Q|1|1|A|2383
9E6Q|1|1|U|2384
9E6Q|1|1|A|2385
9E6Q|1|1|U|2386
9E6Q|1|1|C|2387
9E6Q|1|1|OMG|2388

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AN

Large ribosomal subunit protein uL16

Chain AS

Large ribosomal subunit protein eL21