HL_9E6Q_053
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GGUCAGAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9E6Q_053 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.304
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9E6Q|1|1|G|2415
9E6Q|1|1|G|2416
9E6Q|1|1|U|2417
9E6Q|1|1|C|2418
9E6Q|1|1|A|2419
9E6Q|1|1|G|2420
9E6Q|1|1|A|2421
9E6Q|1|1|A|2422
9E6Q|1|1|A|2423
9E6Q|1|1|U|2424
9E6Q|1|1|C|2425
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- Large ribosomal subunit protein uL5
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