HL_9E6Q_054

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGUAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_054 not in the Motif Atlas

Homologous match to HL_4V9F_058

Geometric discrepancy: 0.1275

The information below is about HL_4V9F_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9E6Q|1|1|U|2436
9E6Q|1|1|G|2437
9E6Q|1|1|U|2438
9E6Q|1|1|A|2439
9E6Q|1|1|A|2440
9E6Q|1|1|G|2441
9E6Q|1|1|G|2442
9E6Q|1|1|G|2443

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Putative signal-transduction protein with CBS domains

Chain AN

Large ribosomal subunit protein uL16

Chain AS

Large ribosomal subunit protein eL21