HL_9E6Q_057

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CACCAGUGG

Length

9 nucleotides

Bulged bases

9E6Q|1|1|A|2522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_057 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.1818

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9E6Q|1|1|C|2521
9E6Q|1|1|A|2522
9E6Q|1|1|C|2523
9E6Q|1|1|C|2524
9E6Q|1|1|A|2525
9E6Q|1|1|G|2526
9E6Q|1|1|U|2527
9E6Q|1|1|G|2528
9E6Q|1|1|G|2529

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AH

Large ribosomal subunit protein eL13

Chain AL

Large ribosomal subunit protein uL15

Chain Ah

eL42